Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35502 * 117.00150 * 2 1 4 4 N 1.31011 * 125.76555 * 0.03824 * 3 2 1 5 5 C 1.34358 * 109.30464 * 179.73760 * 4 3 2 6 6 C 1.34419 * 108.26379 * 0.37568 * 5 4 3 7 7 C 1.50703 * 126.54271 * 179.89797 * 6 5 4 8 8 C 1.53000 * 109.46912 * 84.68906 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00006 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 89.99626 * 13 11 9 15 15 H 1.48502 * 109.47140 * 209.99610 * 13 11 9 16 16 H 1.48501 * 109.46982 * 329.99723 * 13 11 9 17 17 N 1.35878 * 125.76247 * 180.02562 * 3 2 1 18 18 C 1.46497 * 126.48068 * 0.02562 * 17 3 2 19 19 H 1.08993 * 109.47158 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47135 * 300.00412 * 1 2 3 21 21 H 1.09005 * 109.47043 * 59.99957 * 1 2 3 22 22 H 1.08000 * 125.87212 * 180.27822 * 5 4 3 23 23 H 1.09002 * 109.47152 * 324.68678 * 7 6 5 24 24 H 1.09001 * 109.46980 * 204.68778 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99742 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99914 * 8 7 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.47165 * 270.02926 * 18 17 3 29 29 H 1.09005 * 109.47025 * 30.02682 * 18 17 3 30 30 H 1.08994 * 109.47308 * 150.02530 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.4447 2.3722 0.0007 5 6 2.3689 3.3474 0.0063 6 6 3.5852 2.7751 0.0007 7 6 4.9126 3.4887 0.0018 8 6 5.3015 3.8401 1.4392 9 6 6.6292 4.5531 1.4404 10 1 7.1439 4.7374 0.5090 11 6 7.1863 4.9709 2.6304 12 7 8.3452 5.5926 2.6314 13 14 6.2957 4.6526 4.2413 14 1 6.7199 3.3397 4.7903 15 1 6.6292 5.7260 5.2117 16 1 4.8301 4.6390 4.0023 17 7 3.3872 1.4143 -0.0005 18 6 4.4274 0.3828 -0.0016 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 2.1690 4.4087 0.0124 23 1 4.8344 4.4025 -0.5872 24 1 5.6738 2.8405 -0.4324 25 1 4.5403 4.4883 1.8735 26 1 5.3797 2.9264 2.0282 27 1 8.7369 5.8869 3.4685 28 1 4.6855 0.1259 1.0257 29 1 4.0587 -0.5046 -0.5163 30 1 5.3120 0.7593 -0.5152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -2.011111 kcal Electronic energy + Delta-G solvation = -13629.885373 eV Core-core repulsion = 11232.963623 eV Total energy + Delta-G solvation = -2396.921750 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.05252 -39.25159 -35.95873 -34.96055 -33.73753 -30.08355 -28.53010 -27.57732 -26.47004 -23.06247 -22.15204 -20.89617 -19.05971 -18.78309 -17.56214 -17.12814 -16.37051 -15.81058 -15.60020 -15.02885 -14.73995 -14.50940 -14.18959 -13.80875 -13.57415 -13.17458 -12.93033 -12.80811 -12.34665 -11.91460 -11.83012 -11.74103 -11.39925 -10.98642 -10.76117 -10.58849 -8.87065 -8.29036 -6.32364 1.04835 1.15356 1.33815 1.37344 1.48779 2.07183 2.35427 2.69470 3.06809 3.68225 3.94738 4.10884 4.28306 4.35981 4.42091 4.47001 4.63503 4.69823 4.70937 4.83123 4.97383 5.08495 5.37649 5.42368 5.60319 5.63499 5.86032 6.27587 6.48590 6.75531 6.98437 7.32587 8.87289 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048576 B = 0.007261 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.273810 B = 3855.254696 C = 3944.445602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.308 6.308 3 C 0.373 3.627 4 N -0.546 5.546 5 C -0.030 4.030 6 C -0.015 4.015 7 C -0.017 4.017 8 C 0.001 3.999 9 C -0.527 4.527 10 H 0.043 0.957 11 C 0.011 3.989 12 N -0.948 5.948 13 Si 0.941 3.059 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.254 1.254 17 N -0.458 5.458 18 C 0.070 3.930 19 H 0.137 0.863 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.184 0.816 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.018 0.982 26 H 0.009 0.991 27 H 0.266 0.734 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.298 -12.234 -4.603 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.213 6.213 3 C 0.073 3.927 4 N -0.282 5.282 5 C -0.174 4.174 6 C -0.126 4.126 7 C -0.056 4.056 8 C -0.037 4.037 9 C -0.565 4.565 10 H 0.061 0.939 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.766 3.234 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.178 1.178 17 N -0.152 5.152 18 C -0.071 4.071 19 H 0.155 0.845 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.201 0.799 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.849 -12.459 -4.503 19.166 hybrid contribution 0.786 0.146 0.807 1.135 sum -13.064 -12.313 -3.697 18.329 Atomic orbital electron populations 1.23172 0.73605 1.05319 1.02402 1.85824 1.25030 1.20152 1.90337 1.20630 0.81360 0.87057 1.03617 1.70422 1.33224 0.97117 1.27402 1.22077 0.87509 0.99204 1.08624 1.21479 0.98876 0.81314 1.10979 1.19867 0.88843 0.98600 0.98242 1.19446 0.94776 0.95522 0.93958 1.21428 1.04595 1.36637 0.93845 0.93866 1.25859 0.95372 0.94430 1.02930 1.70043 1.19223 1.41331 1.28238 0.85789 0.80196 0.78223 0.79239 1.19399 1.20837 1.17784 1.44989 1.05137 1.07305 1.57720 1.22250 0.90218 0.90123 1.04517 0.84491 0.92731 0.92333 0.79890 0.89522 0.91242 0.96317 0.97250 0.92471 0.90245 0.87550 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.93 10.67 113.37 1.21 2.14 16 2 O -0.31 -8.26 10.49 -88.03 -0.92 -9.18 16 3 C 0.37 12.20 8.51 179.85 1.53 13.73 16 4 N -0.55 -19.26 10.64 -314.09 -3.34 -22.60 16 5 C -0.03 -1.05 11.77 83.43 0.98 -0.06 16 6 C -0.01 -0.52 6.22 40.79 0.25 -0.27 16 7 C -0.02 -0.64 5.49 29.85 0.16 -0.48 16 8 C 0.00 0.04 4.02 29.85 0.12 0.16 16 9 C -0.53 -29.51 9.66 25.60 0.25 -29.26 16 10 H 0.04 2.61 7.99 -2.91 -0.02 2.59 16 11 C 0.01 0.65 5.47 84.65 0.46 1.12 16 12 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 13 Si 0.94 44.48 27.47 68.60 1.88 46.36 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 16 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 17 N -0.46 -14.70 3.19 -648.81 -2.07 -16.77 16 18 C 0.07 1.68 10.98 127.77 1.40 3.09 16 19 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 22 H 0.18 5.75 8.06 -2.91 -0.02 5.73 16 23 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 24 H 0.07 2.50 7.11 -2.39 -0.02 2.48 16 25 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 26 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.10 2.20 7.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.87 261.52 3.28 -65.59 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.06 Total: 4.73 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 6.37 Total: -9.84 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -5.11 Total: -97.66 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.92 Total: -9.18 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -68.87 3.28 -65.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.581 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds