Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46903 * 109.46886 * 2 1 4 4 C 1.46906 * 110.99809 * 296.54084 * 3 2 1 5 5 C 1.50700 * 109.47032 * 288.62584 * 4 3 2 6 6 H 1.08002 * 120.00293 * 4.68232 * 5 4 3 7 7 C 1.37883 * 119.99778 * 184.67489 * 5 4 3 8 8 N 1.31515 * 119.99933 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99801 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47379 * 59.99942 * 9 7 5 11 11 H 1.48500 * 109.46756 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47209 * 299.99652 * 9 7 5 13 13 C 1.39268 * 111.00369 * 60.49597 * 3 2 1 14 14 C 1.35864 * 126.67728 * 255.44212 * 13 3 2 15 15 N 1.33301 * 108.85817 * 180.25941 * 14 13 3 16 16 N 1.28741 * 109.98164 * 359.55121 * 15 14 13 17 17 N 1.36246 * 126.67923 * 75.43673 * 13 3 2 18 18 C 1.46509 * 126.83716 * 0.02562 * 17 13 3 19 19 H 1.09001 * 109.46731 * 66.30568 * 1 2 3 20 20 H 1.08995 * 109.46583 * 186.30160 * 1 2 3 21 21 H 1.08997 * 109.46957 * 306.30179 * 1 2 3 22 22 H 1.09004 * 109.46851 * 240.00159 * 2 1 3 23 23 H 1.08995 * 109.47083 * 119.99594 * 2 1 3 24 24 H 1.08994 * 109.47096 * 48.63091 * 4 3 2 25 25 H 1.08999 * 109.46658 * 168.62563 * 4 3 2 26 26 H 0.96999 * 119.99625 * 180.02562 * 8 7 5 27 27 H 1.08005 * 125.57328 * 359.97438 * 14 13 3 28 28 H 1.08994 * 109.46623 * 94.65682 * 18 17 13 29 29 H 1.08997 * 109.46672 * 214.65581 * 18 17 13 30 30 H 1.08995 * 109.46932 * 334.65632 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6173 2.0856 -1.2270 5 6 2.4057 1.5485 -2.3936 6 1 3.0774 0.7145 -2.2533 7 6 2.2693 2.1217 -3.6402 8 7 1.4517 3.1375 -3.8109 9 14 3.2460 1.4555 -5.0864 10 1 2.8940 0.0298 -5.3067 11 1 2.9227 2.2398 -6.3053 12 1 4.6982 1.5678 -4.7969 13 6 1.5824 2.0691 1.1315 14 6 0.5929 2.9986 1.1861 15 7 0.4733 3.4273 2.4426 16 7 1.3214 2.8202 3.1972 17 7 2.0634 1.9364 2.3993 18 6 3.1413 1.0480 2.8413 19 1 -0.3633 0.4130 -0.9411 20 1 -0.3632 -1.0214 0.1128 21 1 -0.3633 0.6084 0.8282 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 0.5535 1.9273 -1.4035 25 1 1.8125 3.1523 -1.1168 26 1 1.3555 3.5405 -4.6880 27 1 0.0031 3.3383 0.3475 28 1 4.0839 1.5953 2.8468 29 1 2.9251 0.6867 3.8467 30 1 3.2168 0.2012 2.1593 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300827077.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = 103.719230 kcal Electronic energy + Delta-G solvation = -14154.164907 eV Core-core repulsion = 11794.120720 eV Total energy + Delta-G solvation = -2360.044187 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.52534 -37.39843 -33.86676 -32.71706 -30.47147 -28.73096 -27.31059 -26.53686 -23.58095 -22.06883 -21.07951 -19.55321 -16.91231 -16.10052 -15.90534 -15.39443 -14.72011 -14.22731 -14.02552 -13.38740 -12.93674 -12.72655 -12.55625 -12.11629 -11.58473 -11.51520 -11.27186 -10.91729 -10.87707 -10.57656 -10.42216 -10.16012 -9.69696 -9.43954 -8.84833 -8.50205 -7.53997 -6.17784 -4.21301 1.84354 2.60032 3.09692 3.24761 3.30290 3.31810 4.25516 4.53198 4.84566 5.18229 5.26964 5.37181 5.41372 5.55733 5.60903 5.69001 5.81327 5.96408 6.11786 6.36572 6.57388 6.59968 6.76478 7.08259 7.15268 7.56489 7.71164 7.90328 8.23603 8.73025 8.83307 9.43056 10.92584 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.008910 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.692550 B = 3141.720112 C = 3282.620124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.065 3.935 3 N -0.475 5.475 4 C 0.196 3.804 5 C -0.517 4.517 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.268 3.732 14 C -0.119 4.119 15 N -0.234 5.234 16 N -0.105 5.105 17 N -0.379 5.379 18 C 0.100 3.900 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.098 0.902 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.042 0.958 26 H 0.265 0.735 27 H 0.182 0.818 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -6.403 7.275 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.061 4.061 3 N -0.196 5.196 4 C 0.073 3.927 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.038 3.962 14 C -0.281 4.281 15 N -0.102 5.102 16 N -0.084 5.084 17 N -0.170 5.170 18 C -0.042 4.042 19 H 0.092 0.908 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.116 0.884 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.199 0.801 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.448 -5.779 8.585 10.450 hybrid contribution 0.124 -0.670 -1.923 2.041 sum 1.571 -6.449 6.662 9.404 Atomic orbital electron populations 1.22423 0.97641 1.01582 1.03081 1.22096 0.93414 0.88150 1.02459 1.59123 1.56985 1.02962 1.00575 1.20013 0.95816 0.94372 0.82510 1.20966 1.25443 1.17031 0.92068 0.91727 1.24951 0.95475 0.94874 0.98922 1.69930 1.36436 1.22756 1.23917 0.86500 0.80393 0.78869 0.81311 1.20157 1.21204 1.20132 1.20425 0.92158 0.98104 0.85498 1.23185 1.03144 1.05873 0.95890 1.74026 1.15030 1.17976 1.03174 1.81860 1.06549 1.05637 1.14337 1.50318 1.28354 1.31941 1.06418 1.21902 0.87718 0.92935 1.01615 0.90782 0.92572 0.93148 0.88378 0.92620 0.96751 0.94035 0.92512 0.80070 0.90235 0.89619 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 9.28 37.16 0.34 -2.72 16 2 C 0.07 1.10 5.79 -3.82 -0.02 1.08 16 3 N -0.47 -9.49 4.68 -174.36 -0.82 -10.30 16 4 C 0.20 4.67 3.55 -4.97 -0.02 4.66 16 5 C -0.52 -13.33 8.61 -34.44 -0.30 -13.62 16 6 H 0.06 1.63 7.32 -52.49 -0.38 1.24 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 C 0.27 5.20 4.97 -152.55 -0.76 4.44 16 14 C -0.12 -2.40 9.92 -17.76 -0.18 -2.58 16 15 N -0.23 -4.78 12.32 30.25 0.37 -4.41 16 16 N -0.11 -2.04 13.81 60.35 0.83 -1.21 16 17 N -0.38 -6.65 4.09 -67.04 -0.27 -6.93 16 18 C 0.10 1.24 11.51 59.85 0.69 1.93 16 19 H 0.07 1.33 6.57 -51.93 -0.34 0.99 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.85 6.47 -51.93 -0.34 0.52 16 22 H 0.10 1.72 7.07 -51.93 -0.37 1.36 16 23 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 24 H 0.01 0.36 5.95 -51.93 -0.31 0.05 16 25 H 0.04 1.10 7.64 -51.93 -0.40 0.70 16 26 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 27 H 0.18 3.58 7.46 -52.48 -0.39 3.19 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.05 6.40 -51.93 -0.33 0.72 16 LS Contribution 252.30 15.07 3.80 3.80 Total: -1.00 -29.25 252.30 -4.30 -33.55 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.60 Total: -0.39 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.33 Total: -5.30 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.85 Total: -47.08 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.25 -4.30 -33.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300827077.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.273 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds