Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46903 * 109.46886 * 2 1 4 4 C 1.46906 * 110.99809 * 296.54084 * 3 2 1 5 5 C 1.50700 * 109.47032 * 288.62584 * 4 3 2 6 6 H 1.08002 * 120.00293 * 4.68232 * 5 4 3 7 7 C 1.37883 * 119.99778 * 184.67489 * 5 4 3 8 8 N 1.31515 * 119.99933 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99801 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47379 * 59.99942 * 9 7 5 11 11 H 1.48500 * 109.46756 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47209 * 299.99652 * 9 7 5 13 13 C 1.39268 * 111.00369 * 60.49597 * 3 2 1 14 14 C 1.35864 * 126.67728 * 255.44212 * 13 3 2 15 15 N 1.33301 * 108.85817 * 180.25941 * 14 13 3 16 16 N 1.28741 * 109.98164 * 359.55121 * 15 14 13 17 17 N 1.36246 * 126.67923 * 75.43673 * 13 3 2 18 18 C 1.46509 * 126.83716 * 0.02562 * 17 13 3 19 19 H 1.09001 * 109.46731 * 66.30568 * 1 2 3 20 20 H 1.08995 * 109.46583 * 186.30160 * 1 2 3 21 21 H 1.08997 * 109.46957 * 306.30179 * 1 2 3 22 22 H 1.09004 * 109.46851 * 240.00159 * 2 1 3 23 23 H 1.08995 * 109.47083 * 119.99594 * 2 1 3 24 24 H 1.08994 * 109.47096 * 48.63091 * 4 3 2 25 25 H 1.08999 * 109.46658 * 168.62563 * 4 3 2 26 26 H 0.96999 * 119.99625 * 180.02562 * 8 7 5 27 27 H 1.08005 * 125.57328 * 359.97438 * 14 13 3 28 28 H 1.08994 * 109.46623 * 94.65682 * 18 17 13 29 29 H 1.08997 * 109.46672 * 214.65581 * 18 17 13 30 30 H 1.08995 * 109.46932 * 334.65632 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6173 2.0856 -1.2270 5 6 2.4057 1.5485 -2.3936 6 1 3.0774 0.7145 -2.2533 7 6 2.2693 2.1217 -3.6402 8 7 1.4517 3.1375 -3.8109 9 14 3.2460 1.4555 -5.0864 10 1 2.8940 0.0298 -5.3067 11 1 2.9227 2.2398 -6.3053 12 1 4.6982 1.5678 -4.7969 13 6 1.5824 2.0691 1.1315 14 6 0.5929 2.9986 1.1861 15 7 0.4733 3.4273 2.4426 16 7 1.3214 2.8202 3.1972 17 7 2.0634 1.9364 2.3993 18 6 3.1413 1.0480 2.8413 19 1 -0.3633 0.4130 -0.9411 20 1 -0.3632 -1.0214 0.1128 21 1 -0.3633 0.6084 0.8282 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5137 0.8900 24 1 0.5535 1.9273 -1.4035 25 1 1.8125 3.1523 -1.1168 26 1 1.3555 3.5405 -4.6880 27 1 0.0031 3.3383 0.3475 28 1 4.0839 1.5953 2.8468 29 1 2.9251 0.6867 3.8467 30 1 3.2168 0.2012 2.1593 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300827077.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = 83.375799 kcal Electronic energy + Delta-G solvation = -14155.047065 eV Core-core repulsion = 11794.120720 eV Total energy + Delta-G solvation = -2360.926345 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.03507 -38.98065 -35.29242 -34.63181 -31.90422 -30.43054 -28.70459 -28.12569 -25.30128 -23.61963 -22.60040 -21.06886 -18.57094 -17.90469 -17.38016 -16.99364 -16.35994 -15.78857 -15.51624 -14.84576 -14.38249 -14.13688 -13.75674 -13.69554 -13.24782 -13.08083 -12.82241 -12.66274 -12.58860 -12.14985 -12.01376 -11.81001 -11.42352 -11.04086 -10.63069 -10.27155 -9.14377 -8.19769 -6.30089 0.35301 1.23412 1.46618 1.48249 1.52322 1.56047 2.41359 2.97256 3.16093 3.66980 3.88922 3.99097 4.16478 4.25952 4.37538 4.48421 4.61314 4.64057 4.80551 4.91044 5.02483 5.16919 5.24304 5.36259 5.47383 5.66967 5.97544 6.01919 6.43642 6.81360 7.20590 7.38829 8.90760 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.008910 C = 0.008528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.692550 B = 3141.720112 C = 3282.620124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 N -0.473 5.473 4 C 0.214 3.786 5 C -0.525 4.525 6 H 0.072 0.928 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.271 1.271 13 C 0.262 3.738 14 C -0.132 4.132 15 N -0.252 5.252 16 N -0.109 5.109 17 N -0.366 5.366 18 C 0.087 3.913 19 H 0.048 0.952 20 H 0.086 0.914 21 H 0.040 0.960 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.002 0.998 25 H 0.006 0.994 26 H 0.265 0.735 27 H 0.173 0.827 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -8.303 7.802 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.064 4.064 3 N -0.195 5.195 4 C 0.089 3.911 5 C -0.563 4.563 6 H 0.090 0.910 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.196 1.196 13 C 0.031 3.969 14 C -0.294 4.294 15 N -0.120 5.120 16 N -0.087 5.087 17 N -0.158 5.158 18 C -0.053 4.053 19 H 0.067 0.933 20 H 0.105 0.895 21 H 0.059 0.941 22 H 0.112 0.888 23 H 0.109 0.891 24 H 0.019 0.981 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.190 0.810 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.685 -7.709 9.148 12.261 hybrid contribution -0.234 -0.111 -1.994 2.011 sum 2.451 -7.820 7.155 10.879 Atomic orbital electron populations 1.22323 0.97233 1.03050 1.01251 1.22259 0.93780 0.86397 1.03919 1.59044 1.57095 1.03993 0.99349 1.19583 0.94840 0.92689 0.84018 1.21314 1.25273 1.16984 0.92719 0.91006 1.25825 0.96427 0.95086 1.01802 1.70067 1.38148 1.24225 1.24485 0.85453 0.78927 0.78641 0.77709 1.18827 1.21394 1.19578 1.20305 0.92368 0.98143 0.86106 1.23189 1.03877 1.06493 0.95849 1.74009 1.15911 1.18842 1.03226 1.81761 1.06571 1.05869 1.14548 1.50601 1.28388 1.31521 1.05252 1.22403 0.86669 0.92692 1.03557 0.93325 0.89519 0.94082 0.88830 0.89143 0.98058 0.97540 0.92611 0.80974 0.88862 0.86699 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.62 9.28 71.98 0.67 -4.95 16 2 C 0.06 1.96 5.79 86.30 0.50 2.46 16 3 N -0.47 -18.52 4.68 -705.56 -3.30 -21.82 16 4 C 0.21 10.36 3.55 85.56 0.30 10.66 16 5 C -0.52 -26.98 8.61 25.60 0.22 -26.76 16 6 H 0.07 3.52 7.32 -2.91 -0.02 3.50 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -52.97 13.29 21.45 0.28 -52.69 16 9 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 13 C 0.26 9.97 4.97 131.02 0.65 10.62 16 14 C -0.13 -5.40 9.92 83.92 0.83 -4.57 16 15 N -0.25 -10.31 12.32 -58.21 -0.72 -11.03 16 16 N -0.11 -4.09 13.81 37.02 0.51 -3.58 16 17 N -0.37 -12.11 4.09 -366.02 -1.50 -13.61 16 18 C 0.09 1.84 11.51 127.77 1.47 3.31 16 19 H 0.05 1.75 6.57 -2.39 -0.02 1.74 16 20 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 21 H 0.04 1.35 6.47 -2.39 -0.02 1.33 16 22 H 0.09 3.09 7.07 -2.39 -0.02 3.07 16 23 H 0.09 2.26 6.57 -2.39 -0.02 2.25 16 24 H 0.00 0.09 5.95 -2.39 -0.01 0.07 16 25 H 0.01 0.35 7.64 -2.39 -0.02 0.34 16 26 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.17 7.20 7.46 -2.91 -0.02 7.18 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.11 1.99 6.40 -2.39 -0.02 1.98 16 Total: -1.00 -62.60 252.30 3.56 -59.04 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.14 Total: 8.56 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.11 Total: -8.36 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -4.72 Total: -102.72 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -62.60 3.56 -59.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300827077.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.419 kcal (2) G-P(sol) polarization free energy of solvation -62.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds