Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46896 * 111.00419 * 306.04712 * 12 2 1 14 14 C 1.39285 * 110.99845 * 70.00626 * 12 2 1 15 15 C 1.35862 * 126.67768 * 359.68059 * 14 12 2 16 16 N 1.33298 * 108.85518 * 179.87251 * 15 14 12 17 17 N 1.28732 * 109.98170 * 0.40640 * 16 15 14 18 18 N 1.36251 * 126.67434 * 179.97438 * 14 12 2 19 19 C 1.46499 * 126.83789 * 359.97438 * 18 14 12 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.46919 * 60.00027 * 13 12 2 25 25 H 1.08996 * 109.47115 * 180.02562 * 13 12 2 26 26 H 1.09004 * 109.47181 * 300.00189 * 13 12 2 27 27 H 1.07998 * 125.56820 * 0.02562 * 15 14 12 28 28 H 1.08994 * 109.47603 * 89.99790 * 19 18 14 29 29 H 1.09008 * 109.46544 * 209.99902 * 19 18 14 30 30 H 1.08997 * 109.47201 * 329.98928 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0196 -0.6926 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7667 0.0563 -2.3463 15 6 1.1491 1.2649 -2.4066 16 7 1.0973 1.6592 -3.6788 17 7 1.6377 0.7704 -4.4372 18 7 2.0857 -0.2834 -3.6267 19 6 2.7615 -1.5057 -4.0688 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7090 1.1614 3.4844 24 1 0.3490 -1.9549 -1.3693 25 1 1.8139 -2.5261 -2.2040 26 1 1.7058 -2.6222 -0.4302 27 1 0.7654 1.8171 -1.5615 28 1 2.0191 -2.2748 -4.2816 29 1 3.3370 -1.2966 -4.9707 30 1 3.4316 -1.8548 -3.2832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300988306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = 112.927522 kcal Electronic energy + Delta-G solvation = -14301.912569 eV Core-core repulsion = 11942.267684 eV Total energy + Delta-G solvation = -2359.644886 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.49793 -37.47146 -34.07704 -32.75523 -29.47123 -28.92072 -27.32364 -25.49007 -25.12789 -21.68607 -21.08308 -19.42693 -16.95488 -16.04409 -15.62078 -15.46777 -14.60606 -14.47334 -13.51256 -13.27343 -12.96410 -12.79289 -12.58926 -11.80835 -11.34272 -11.19399 -11.10740 -10.90919 -10.79858 -10.56950 -10.26106 -10.14501 -9.75978 -9.15067 -8.88205 -8.53989 -7.37328 -6.18760 -4.25148 1.90994 2.62515 3.17150 3.22837 3.28575 3.30100 4.23686 4.55214 4.84361 5.13806 5.21606 5.40663 5.46853 5.58791 5.79095 5.91944 6.01133 6.27624 6.50772 6.65626 6.70535 6.80782 6.84917 7.29973 7.39947 7.60318 7.76823 8.04708 8.23652 8.75567 8.81882 9.40380 10.88273 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051707 B = 0.009239 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.385557 B = 3029.827481 C = 3357.304189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.217 3.783 3 H 0.053 0.947 4 C -0.512 4.512 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.463 5.463 13 C 0.028 3.972 14 C 0.270 3.730 15 C -0.125 4.125 16 N -0.231 5.231 17 N -0.112 5.112 18 N -0.391 5.391 19 C 0.099 3.901 20 H 0.024 0.976 21 H 0.034 0.966 22 H 0.097 0.903 23 H 0.265 0.735 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.187 0.813 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -5.650 -6.490 8.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.112 3.888 3 H 0.071 0.929 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.182 5.182 13 C -0.119 4.119 14 C 0.039 3.961 15 C -0.286 4.286 16 N -0.099 5.099 17 N -0.090 5.090 18 N -0.183 5.183 19 C -0.043 4.043 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.204 0.796 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.624 -5.122 -7.735 9.418 hybrid contribution -0.185 -0.907 1.878 2.094 sum 1.439 -6.028 -5.857 8.527 Atomic orbital electron populations 1.22567 0.99238 1.00234 1.02012 1.19557 0.90939 0.94922 0.83336 0.92907 1.20906 1.31876 1.13113 0.89163 0.91723 1.24895 0.94901 0.95037 0.99052 1.69859 1.36095 1.22541 1.24069 0.86487 0.79248 0.79524 0.81743 1.20133 1.21184 1.20241 1.59150 1.55512 1.03607 0.99923 1.22469 0.97934 0.89026 1.02453 1.20650 0.94696 0.96090 0.84674 1.23151 1.11286 0.98832 0.95379 1.74002 1.12217 1.20597 1.03102 1.81830 1.20073 0.93268 1.13859 1.50215 1.45083 1.18124 1.04882 1.21927 0.97279 0.82897 1.02237 0.95687 0.94649 0.88475 0.92513 0.94222 0.93084 0.89034 0.79572 0.90740 0.89223 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.05 7.90 37.16 0.29 -3.75 16 2 C 0.22 5.03 1.87 -68.86 -0.13 4.90 16 3 H 0.05 1.36 7.17 -51.93 -0.37 0.98 16 4 C -0.51 -12.87 7.97 -34.44 -0.27 -13.14 16 5 H 0.06 1.60 7.10 -52.49 -0.37 1.23 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.63 11.32 55.43 0.63 -23.00 16 8 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.46 -9.33 4.78 -174.57 -0.83 -10.16 16 13 C 0.03 0.47 8.63 60.06 0.52 0.99 16 14 C 0.27 5.33 6.17 -152.53 -0.94 4.38 16 15 C -0.12 -2.57 9.30 -17.77 -0.17 -2.74 16 16 N -0.23 -4.81 12.32 30.25 0.37 -4.44 16 17 N -0.11 -2.20 13.81 60.35 0.83 -1.37 16 18 N -0.39 -6.91 4.09 -67.04 -0.27 -7.18 16 19 C 0.10 1.21 9.77 59.85 0.58 1.79 16 20 H 0.02 0.51 5.48 -51.93 -0.28 0.23 16 21 H 0.03 0.76 6.32 -51.93 -0.33 0.43 16 22 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 24 H 0.04 0.69 6.21 -51.93 -0.32 0.37 16 25 H 0.05 0.71 5.30 -51.93 -0.28 0.43 16 26 H 0.09 1.61 6.86 -51.93 -0.36 1.25 16 27 H 0.19 3.83 5.99 -52.49 -0.31 3.51 16 28 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 29 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.09 1.08 7.63 -51.93 -0.40 0.68 16 LS Contribution 242.44 15.07 3.65 3.65 Total: -1.00 -28.21 242.44 -4.15 -32.36 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.30 Total: 1.15 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.21 Total: -6.02 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.73 Total: -46.16 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.21 -4.15 -32.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300988306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.290 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds