Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46896 * 111.00419 * 306.04712 * 12 2 1 14 14 C 1.39285 * 110.99845 * 70.00626 * 12 2 1 15 15 C 1.35862 * 126.67768 * 359.68059 * 14 12 2 16 16 N 1.33298 * 108.85518 * 179.87251 * 15 14 12 17 17 N 1.28732 * 109.98170 * 0.40640 * 16 15 14 18 18 N 1.36251 * 126.67434 * 179.97438 * 14 12 2 19 19 C 1.46499 * 126.83789 * 359.97438 * 18 14 12 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.46919 * 60.00027 * 13 12 2 25 25 H 1.08996 * 109.47115 * 180.02562 * 13 12 2 26 26 H 1.09004 * 109.47181 * 300.00189 * 13 12 2 27 27 H 1.07998 * 125.56820 * 0.02562 * 15 14 12 28 28 H 1.08994 * 109.47603 * 89.99790 * 19 18 14 29 29 H 1.09008 * 109.46544 * 209.99902 * 19 18 14 30 30 H 1.08997 * 109.47201 * 329.98928 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 7 2.0196 -0.6926 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7667 0.0563 -2.3463 15 6 1.1491 1.2649 -2.4066 16 7 1.0973 1.6592 -3.6788 17 7 1.6377 0.7704 -4.4372 18 7 2.0857 -0.2834 -3.6267 19 6 2.7615 -1.5057 -4.0688 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7090 1.1614 3.4844 24 1 0.3490 -1.9549 -1.3693 25 1 1.8139 -2.5261 -2.2040 26 1 1.7058 -2.6222 -0.4302 27 1 0.7654 1.8171 -1.5615 28 1 2.0191 -2.2748 -4.2816 29 1 3.3370 -1.2966 -4.9707 30 1 3.4316 -1.8548 -3.2832 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300988306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = 93.561354 kcal Electronic energy + Delta-G solvation = -14302.752349 eV Core-core repulsion = 11942.267684 eV Total energy + Delta-G solvation = -2360.484666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.02086 -39.11181 -35.55354 -34.53312 -31.09797 -30.58462 -28.58884 -27.32908 -26.67482 -23.33632 -22.61206 -21.04697 -18.53472 -17.85060 -17.16690 -17.01295 -16.22198 -16.06844 -15.02492 -14.83908 -14.37633 -14.15020 -13.90944 -13.48549 -12.98437 -12.86407 -12.81731 -12.58141 -12.41767 -12.19603 -12.08026 -11.84941 -11.23594 -10.99821 -10.50855 -10.37070 -8.96428 -8.13139 -6.25531 0.40997 1.26177 1.48087 1.49428 1.56463 1.58020 2.42834 3.01003 3.18108 3.67089 3.92051 4.03844 4.33407 4.34658 4.52720 4.58229 4.67853 4.69590 4.89889 4.98072 5.02182 5.14096 5.30692 5.55830 5.64555 5.73370 6.03355 6.20029 6.46751 6.82329 7.25945 7.43502 8.93092 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051707 B = 0.009239 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.385557 B = 3029.827481 C = 3357.304189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.224 3.776 3 H 0.020 0.980 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.464 5.464 13 C 0.026 3.974 14 C 0.262 3.738 15 C -0.139 4.139 16 N -0.250 5.250 17 N -0.115 5.115 18 N -0.377 5.377 19 C 0.083 3.917 20 H 0.033 0.967 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.264 0.736 24 H 0.035 0.965 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.177 0.823 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -7.526 -7.142 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.118 3.882 3 H 0.038 0.962 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.193 1.193 12 N -0.183 5.183 13 C -0.119 4.119 14 C 0.030 3.970 15 C -0.301 4.301 16 N -0.118 5.118 17 N -0.094 5.094 18 N -0.169 5.169 19 C -0.057 4.057 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.194 0.806 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.325 -7.027 -8.421 11.211 hybrid contribution -0.362 -0.357 1.988 2.052 sum 1.963 -7.383 -6.433 9.988 Atomic orbital electron populations 1.22362 0.98752 1.00278 1.01154 1.19248 0.91135 0.93393 0.84400 0.96225 1.21194 1.31670 1.13143 0.89976 0.91434 1.25644 0.95132 0.95671 1.01783 1.69994 1.37166 1.23798 1.24454 0.85540 0.78598 0.78751 0.78313 1.19931 1.21410 1.19254 1.59067 1.55708 1.04478 0.99052 1.22580 0.97736 0.87468 1.04148 1.20550 0.95112 0.95895 0.85396 1.23137 1.12142 0.99495 0.95321 1.73988 1.13226 1.21443 1.03135 1.81728 1.19884 0.93677 1.14119 1.50513 1.43962 1.18807 1.03663 1.22456 0.98267 0.81357 1.03591 0.94780 0.93982 0.91022 0.92706 0.94635 0.89335 0.89427 0.80559 0.87943 0.86889 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.47 7.90 71.98 0.57 -6.90 16 2 C 0.22 10.43 1.87 44.17 0.08 10.52 16 3 H 0.02 1.05 7.17 -2.39 -0.02 1.03 16 4 C -0.52 -26.01 7.97 25.60 0.20 -25.80 16 5 H 0.07 3.26 7.10 -2.91 -0.02 3.24 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -49.40 11.32 21.45 0.24 -49.16 16 8 Si 0.96 40.65 29.54 68.60 2.03 42.67 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 12 N -0.46 -18.11 4.78 -706.21 -3.37 -21.49 16 13 C 0.03 0.84 8.63 127.69 1.10 1.94 16 14 C 0.26 10.04 6.17 131.01 0.81 10.85 16 15 C -0.14 -5.74 9.30 83.92 0.78 -4.96 16 16 N -0.25 -10.32 12.32 -58.22 -0.72 -11.04 16 17 N -0.12 -4.36 13.81 37.02 0.51 -3.85 16 18 N -0.38 -12.40 4.09 -366.01 -1.50 -13.90 16 19 C 0.08 1.70 9.77 127.77 1.25 2.94 16 20 H 0.03 1.43 5.48 -2.39 -0.01 1.41 16 21 H 0.04 1.78 6.32 -2.39 -0.02 1.77 16 22 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 23 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 24 H 0.04 1.16 6.21 -2.39 -0.01 1.15 16 25 H 0.09 2.12 5.30 -2.39 -0.01 2.11 16 26 H 0.09 2.88 6.86 -2.39 -0.02 2.86 16 27 H 0.18 7.51 5.99 -2.91 -0.02 7.49 16 28 H 0.10 1.60 7.78 -2.39 -0.02 1.58 16 29 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.10 1.97 7.63 -2.39 -0.02 1.95 16 Total: -1.00 -59.82 242.44 3.59 -56.23 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.15 Total: 10.61 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.24 Total: -10.07 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.83 Total: -99.44 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -59.82 3.59 -56.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300988306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.788 kcal (2) G-P(sol) polarization free energy of solvation -59.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds