Wall clock time and date at job start Mon Mar 30 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99429 * 2 1 4 4 H 1.48499 * 109.47485 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46768 * 120.00190 * 3 2 1 6 6 H 1.48500 * 109.47135 * 240.00066 * 3 2 1 7 7 C 1.37872 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00306 * 159.63691 * 7 2 1 9 9 C 1.50696 * 119.99885 * 339.63715 * 7 2 1 10 10 O 1.42902 * 109.47496 * 335.86603 * 9 7 2 11 11 C 1.53007 * 109.47312 * 95.86426 * 9 7 2 12 12 C 1.53776 * 113.61215 * 43.53779 * 11 9 7 13 13 C 1.53954 * 87.01900 * 220.04958 * 12 11 9 14 14 C 1.53771 * 87.11087 * 25.36514 * 13 12 11 15 15 C 1.53002 * 109.47292 * 215.86168 * 9 7 2 16 16 C 1.53782 * 113.61436 * 159.13630 * 15 9 7 17 17 C 1.53951 * 87.01845 * 220.05138 * 16 15 9 18 18 C 1.53776 * 87.11380 * 25.36506 * 17 16 15 19 19 H 0.97001 * 119.99382 * 179.02032 * 1 2 3 20 20 H 0.96708 * 113.99282 * 299.99926 * 10 9 7 21 21 H 1.09003 * 112.85262 * 174.73651 * 11 9 7 22 22 H 1.08998 * 113.61689 * 334.57085 * 12 11 9 23 23 H 1.09005 * 113.61361 * 105.47093 * 12 11 9 24 24 H 1.09001 * 113.54113 * 270.80799 * 13 12 11 25 25 H 1.09005 * 113.73824 * 139.94812 * 13 12 11 26 26 H 1.09005 * 113.61716 * 220.08762 * 14 13 12 27 27 H 1.08998 * 113.61642 * 89.18713 * 14 13 12 28 28 H 1.08997 * 112.84922 * 290.33687 * 15 9 7 29 29 H 1.08999 * 113.61835 * 334.56937 * 16 15 9 30 30 H 1.09002 * 113.61266 * 105.47591 * 16 15 9 31 31 H 1.09001 * 113.53599 * 270.81273 * 17 16 15 32 32 H 1.09004 * 113.74387 * 139.94518 * 17 16 15 33 33 H 1.09007 * 113.61382 * 220.09104 * 18 17 16 34 34 H 1.08998 * 113.61615 * 89.18518 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1027 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0340 -1.2230 -0.3260 9 6 1.3218 -2.4585 0.4530 10 8 0.2404 -2.1288 1.3271 11 6 0.7820 -3.2116 -0.7646 12 6 1.7680 -3.2639 -1.9434 13 6 0.5555 -3.0329 -2.8635 14 6 -0.1284 -2.3579 -1.6630 15 6 2.3262 -3.3424 1.1952 16 6 1.6682 -4.3791 2.1210 17 6 2.7882 -4.0695 3.1308 18 6 2.9029 -2.6893 2.4624 19 1 -0.4849 -0.8400 -0.0144 20 1 0.5098 -1.6490 2.1223 21 1 0.3565 -4.1817 -0.5078 22 1 2.4842 -2.4423 -1.9504 23 1 2.2387 -4.2381 -2.0761 24 1 0.0687 -3.9548 -3.1818 25 1 0.7560 -2.3525 -3.6912 26 1 -1.1868 -2.6016 -1.5695 27 1 0.0683 -1.2881 -1.5931 28 1 3.0858 -3.7645 0.5372 29 1 0.6761 -4.0884 2.4667 30 1 1.7002 -5.3961 1.7302 31 1 3.6740 -4.6916 3.0027 32 1 2.4471 -4.0266 4.1652 33 1 3.9304 -2.3442 2.3468 34 1 2.2490 -1.9358 2.9015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306174145.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:51 Heat of formation + Delta-G solvation = -24.803261 kcal Electronic energy + Delta-G solvation = -15209.799697 eV Core-core repulsion = 12915.429949 eV Total energy + Delta-G solvation = -2294.369748 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94622 -38.71434 -36.34030 -33.79599 -30.26844 -26.89253 -26.23363 -25.62591 -25.39649 -22.11170 -20.58959 -19.88168 -18.49995 -17.49682 -16.54205 -16.19770 -15.85926 -15.41469 -14.86169 -14.39540 -13.97965 -13.34142 -13.16752 -12.89412 -12.71044 -12.59400 -12.40270 -12.24661 -11.95232 -11.82569 -11.62944 -11.26436 -11.11853 -11.08857 -10.92788 -10.35912 -10.00972 -9.75198 -8.19292 -6.02408 1.58303 1.62131 1.81557 2.67018 3.32904 3.70940 3.91837 3.99356 4.00502 4.07002 4.14167 4.22324 4.28701 4.59098 4.81761 4.83715 4.88195 4.94276 5.02935 5.06331 5.12430 5.13795 5.19358 5.27686 5.39714 5.44494 5.62795 5.67174 5.85986 5.98757 6.24517 6.50092 6.95500 7.31099 7.78876 9.09130 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.017198 C = 0.011973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.255358 B = 1627.679430 C = 2338.085062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.001 4.001 3 Si 1.086 2.914 4 H -0.294 1.294 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.627 4.627 8 H 0.036 0.964 9 C 0.250 3.750 10 O -0.573 6.573 11 C -0.094 4.094 12 C -0.110 4.110 13 C -0.134 4.134 14 C -0.143 4.143 15 C -0.124 4.124 16 C -0.134 4.134 17 C -0.128 4.128 18 C -0.122 4.122 19 H 0.294 0.706 20 H 0.355 0.645 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -6.486 1.496 7.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.206 4.206 3 Si 0.913 3.087 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.665 4.665 8 H 0.054 0.946 9 C 0.211 3.789 10 O -0.378 6.378 11 C -0.113 4.113 12 C -0.148 4.148 13 C -0.172 4.172 14 C -0.181 4.181 15 C -0.143 4.143 16 C -0.171 4.171 17 C -0.166 4.166 18 C -0.159 4.159 19 H 0.110 0.890 20 H 0.201 0.799 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.847 -5.184 1.043 6.539 hybrid contribution 0.370 -1.115 0.299 1.212 sum 4.217 -6.299 1.342 7.698 Atomic orbital electron populations 1.70700 1.07869 1.33931 1.43454 1.26359 0.96336 1.04269 0.93588 0.83350 0.74499 0.73699 0.77202 1.22053 1.20292 1.20915 1.22197 0.98936 0.94875 1.50467 0.94585 1.18807 0.83043 0.91465 0.85625 1.86301 1.37453 1.78083 1.35919 1.22497 0.97326 0.96588 0.94870 1.22702 0.96228 1.00814 0.95036 1.22833 0.97750 1.00285 0.96300 1.23135 0.96210 1.02005 0.96714 1.23055 0.98531 0.96901 0.95805 1.22884 0.98444 0.98216 0.97558 1.22820 0.98802 0.96661 0.98282 1.22652 1.00053 0.96405 0.96825 0.88980 0.79861 0.92549 0.90778 0.91628 0.89610 0.92141 0.94968 0.89028 0.91019 0.91016 0.91981 0.89458 0.90964 0.92616 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.86 11.83 21.45 0.25 -52.61 16 2 C 0.00 -0.06 4.53 84.65 0.38 0.32 16 3 Si 1.09 48.97 29.95 68.60 2.05 51.02 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.63 -32.16 5.47 25.60 0.14 -32.02 16 8 H 0.04 1.90 7.50 -2.91 -0.02 1.88 16 9 C 0.25 11.55 0.38 -11.54 0.00 11.54 16 10 O -0.57 -28.08 8.61 -148.98 -1.28 -29.37 16 11 C -0.09 -4.15 3.26 -10.27 -0.03 -4.18 16 12 C -0.11 -4.39 7.23 31.18 0.23 -4.16 16 13 C -0.13 -5.07 8.09 31.18 0.25 -4.82 16 14 C -0.14 -6.61 6.06 31.12 0.19 -6.42 16 15 C -0.12 -4.88 2.98 -10.27 -0.03 -4.91 16 16 C -0.13 -4.53 7.49 31.18 0.23 -4.30 16 17 C -0.13 -3.77 8.09 31.18 0.25 -3.51 16 18 C -0.12 -4.40 7.03 31.12 0.22 -4.18 16 19 H 0.29 17.05 4.03 -92.71 -0.37 16.68 16 20 H 0.36 16.94 7.35 -74.05 -0.54 16.40 16 21 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 22 H 0.07 3.27 6.38 -2.39 -0.02 3.26 16 23 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.09 4.91 4.40 -2.39 -0.01 4.90 16 28 H 0.07 2.82 8.02 -2.39 -0.02 2.80 16 29 H 0.07 2.63 7.03 -2.39 -0.02 2.62 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 2.40 6.60 -2.39 -0.02 2.38 16 Total: -1.00 -57.07 256.88 3.78 -53.29 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.93 Total: 34.30 kcal Atomic # 6 Polarization: -58.47 SS G_CDS: 1.82 Total: -56.64 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.25 Total: -52.61 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.28 Total: -29.37 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.05 Total: 51.02 kcal Total: -57.07 3.78 -53.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306174145.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.484 kcal (2) G-P(sol) polarization free energy of solvation -57.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds