Wall clock time and date at job start Mon Mar 30 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99594 * 2 1 4 4 C 1.47196 * 109.46224 * 60.02926 * 3 2 1 5 5 N 3.36557 * 86.80161 * 39.33728 * 2 1 3 6 6 C 1.53042 * 109.45795 * 179.97438 * 3 2 1 7 7 C 1.53191 * 109.31396 * 181.38491 * 6 3 2 8 8 N 1.46927 * 108.77587 * 305.36279 * 7 6 3 9 9 C 1.36928 * 120.63320 * 233.58386 * 8 7 6 10 10 H 1.08006 * 119.99692 * 152.33196 * 9 8 7 11 11 C 1.38805 * 120.00080 * 332.05737 * 9 8 7 12 12 N 1.31615 * 120.00232 * 343.03379 * 11 9 8 13 13 Si 1.86805 * 120.00196 * 163.03177 * 11 9 8 14 14 H 1.48498 * 109.46981 * 89.99557 * 13 11 9 15 15 H 1.48493 * 109.47483 * 210.00316 * 13 11 9 16 16 H 1.48508 * 109.47033 * 330.00287 * 13 11 9 17 17 C 1.46927 * 118.73434 * 53.86061 * 8 7 6 18 18 C 1.53037 * 109.46099 * 300.06572 * 3 2 1 19 19 H 1.08998 * 109.47300 * 300.00307 * 1 2 3 20 20 H 1.09003 * 109.46944 * 60.00001 * 1 2 3 21 21 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.49426 * 61.43122 * 6 3 2 23 23 H 1.09004 * 109.49862 * 301.33703 * 6 3 2 24 24 H 1.09002 * 109.58496 * 185.57993 * 7 6 3 25 25 H 1.08996 * 109.70632 * 65.22303 * 7 6 3 26 26 H 0.96999 * 120.00577 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.58767 * 65.92655 * 17 8 7 28 28 H 1.09001 * 109.58826 * 186.34844 * 17 8 7 29 29 H 1.09001 * 109.49597 * 298.56693 * 18 3 2 30 30 H 1.08999 * 109.50032 * 58.63000 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5762 2.0355 1.2023 5 7 1.2412 2.5990 2.1301 6 6 3.5358 1.1844 0.0006 7 6 4.1552 2.5851 0.0356 8 7 3.6127 3.3701 -1.0817 9 6 4.4500 3.9918 -1.9690 10 1 4.1243 4.1731 -2.9826 11 6 5.7153 4.3941 -1.5641 12 7 5.9962 4.4910 -0.2819 13 14 7.0196 4.7979 -2.8390 14 1 6.9434 6.2398 -3.1855 15 1 8.3635 4.4918 -2.2865 16 1 6.7885 3.9829 -4.0588 17 6 2.1546 3.4804 -1.2251 18 6 1.5571 2.0653 -1.2488 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 3.8599 0.6657 -0.9015 23 1 3.8558 0.6231 0.8785 24 1 5.2380 2.5083 -0.0636 25 1 3.9083 3.0727 0.9786 26 1 6.8803 4.7725 0.0011 27 1 1.7457 4.0382 -0.3826 28 1 1.9169 3.9946 -2.1563 29 1 1.8996 1.5384 -2.1394 30 1 0.4691 2.1303 -1.2604 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306264992.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:00 Heat of formation + Delta-G solvation = -12.306354 kcal Electronic energy + Delta-G solvation = -14337.882793 eV Core-core repulsion = 11940.514608 eV Total energy + Delta-G solvation = -2397.368185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91822 -37.82318 -37.06344 -34.44289 -32.31667 -31.44441 -28.07595 -26.77146 -24.46133 -23.92145 -22.11086 -19.09171 -18.54809 -17.11971 -16.60181 -16.44049 -15.70810 -15.52201 -15.24904 -14.98076 -14.57544 -14.10114 -13.82511 -13.33834 -13.28507 -13.16758 -12.93633 -12.58833 -12.29847 -12.25737 -12.10461 -11.87417 -11.55688 -11.49891 -10.74822 -10.54341 -8.74676 -7.87655 -5.33963 1.48081 1.51615 1.53404 1.58932 1.63045 2.53465 2.71617 2.77031 3.31005 3.62498 3.71720 3.86701 4.31101 4.45415 4.50856 4.54891 4.66186 4.74525 4.86112 4.89846 4.97284 5.04252 5.25901 5.39316 5.62869 5.69230 5.98740 6.37246 6.38508 7.12953 7.81968 8.34337 9.20057 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.053273 B = 0.009253 C = 0.008904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.473326 B = 3025.251057 C = 3143.912812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.368 6.368 3 C 0.227 3.773 4 C 0.212 3.788 5 N -0.464 5.464 6 C -0.115 4.115 7 C 0.177 3.823 8 N -0.607 5.607 9 C -0.261 4.261 10 H 0.078 0.922 11 C -0.052 4.052 12 N -0.939 5.939 13 Si 0.970 3.030 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.264 1.264 17 C 0.138 3.862 18 C -0.141 4.141 19 H 0.029 0.971 20 H 0.070 0.930 21 H 0.119 0.881 22 H 0.100 0.900 23 H 0.078 0.922 24 H 0.071 0.929 25 H -0.013 1.013 26 H 0.250 0.750 27 H -0.001 1.001 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 -9.210 -3.810 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.284 6.284 3 C 0.184 3.816 4 C -0.106 4.106 5 N -0.142 5.142 6 C -0.155 4.155 7 C 0.051 3.949 8 N -0.330 5.330 9 C -0.391 4.391 10 H 0.095 0.905 11 C -0.247 4.247 12 N -0.585 5.585 13 Si 0.797 3.203 14 H -0.216 1.216 15 H -0.222 1.222 16 H -0.188 1.188 17 C 0.013 3.987 18 C -0.180 4.180 19 H 0.048 0.952 20 H 0.089 0.911 21 H 0.137 0.863 22 H 0.118 0.882 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.005 0.995 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.982 -8.506 -2.371 12.596 hybrid contribution 0.817 0.712 -0.256 1.114 sum -8.164 -7.794 -2.626 11.589 Atomic orbital electron populations 1.23163 0.79390 1.05051 1.00908 1.88090 1.21823 1.24070 1.94458 1.19087 0.95151 0.81942 0.85408 1.30443 0.92132 0.93243 0.94796 1.81061 1.10377 1.09839 1.12962 1.22154 0.89360 0.99551 1.04398 1.20593 0.98733 0.87409 0.88145 1.44370 1.00776 1.56907 1.30940 1.19584 0.95866 1.31742 0.91903 0.90457 1.25861 1.01808 0.99658 0.97367 1.70189 1.21203 1.51863 1.15286 0.85249 0.78231 0.77751 0.79022 1.21575 1.22187 1.18812 1.21145 0.84079 0.94360 0.99159 1.22646 1.01751 0.97088 0.96557 0.95227 0.91136 0.86316 0.88189 0.90306 0.91040 0.99521 0.94103 0.98304 0.90588 0.87562 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.30 113.37 1.17 1.38 16 2 O -0.37 -9.96 10.33 -148.98 -1.54 -11.49 16 3 C 0.23 7.26 0.84 -12.57 -0.01 7.25 16 4 C 0.21 7.83 10.30 89.44 0.92 8.75 16 5 N -0.46 -18.95 18.54 20.00 0.37 -18.58 16 6 C -0.11 -4.10 5.25 30.67 0.16 -3.94 16 7 C 0.18 8.35 4.95 86.36 0.43 8.77 16 8 N -0.61 -29.14 2.99 -698.26 -2.09 -31.23 16 9 C -0.26 -13.67 9.58 84.03 0.81 -12.87 16 10 H 0.08 3.84 7.89 -2.91 -0.02 3.82 16 11 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 12 N -0.94 -55.06 11.18 21.65 0.24 -54.81 16 13 Si 0.97 43.49 29.59 68.60 2.03 45.52 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 15 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 17 C 0.14 5.40 6.19 86.51 0.54 5.94 16 18 C -0.14 -4.13 4.71 30.82 0.15 -3.99 16 19 H 0.03 0.65 7.16 -2.39 -0.02 0.63 16 20 H 0.07 1.15 6.38 -2.39 -0.02 1.14 16 21 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 23 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 24 H 0.07 3.78 6.04 -2.39 -0.01 3.76 16 25 H -0.01 -0.70 7.39 -2.39 -0.02 -0.72 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.00 -0.04 7.38 -2.39 -0.02 -0.06 16 28 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 29 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.10 2.22 6.47 -2.39 -0.02 2.21 16 Total: -1.00 -64.29 248.51 4.72 -59.57 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.13 Total: 2.12 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.57 Total: 8.89 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -1.47 Total: -104.62 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.54 Total: -11.49 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.29 4.72 -59.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306264992.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.268 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds