Wall clock time and date at job start Mon Mar 30 2020 02:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.50697 * 109.47087 * 240.00062 * 2 1 3 5 5 H 1.08004 * 119.99623 * 239.99920 * 4 2 1 6 6 C 1.37878 * 120.00343 * 59.99735 * 4 2 1 7 7 N 1.31516 * 119.99762 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47370 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47154 * 120.00170 * 8 6 4 11 11 H 1.48498 * 109.47088 * 240.00100 * 8 6 4 12 12 C 1.53001 * 109.47420 * 119.99926 * 2 1 3 13 13 N 1.46505 * 109.46960 * 300.00081 * 12 2 1 14 14 C 1.38697 * 125.98234 * 90.00037 * 13 12 2 15 15 C 1.32867 * 107.91222 * 180.02562 * 14 13 12 16 16 N 1.38697 * 107.91273 * 0.24263 * 15 14 13 17 17 H 0.97001 * 125.97685 * 179.71427 * 16 15 14 18 18 C 1.34752 * 125.98409 * 270.01983 * 13 12 2 19 19 O 1.21800 * 125.94580 * 359.96190 * 18 13 12 20 20 H 1.09002 * 109.46972 * 299.99774 * 1 2 3 21 21 H 1.08994 * 109.47152 * 59.99972 * 1 2 3 22 22 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46869 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.46647 * 299.99986 * 3 2 1 25 25 H 1.09002 * 109.47046 * 60.00271 * 3 2 1 26 26 H 0.96996 * 120.00057 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47316 * 180.02562 * 12 2 1 28 28 H 1.09007 * 109.46993 * 59.99762 * 12 2 1 29 29 H 1.08000 * 126.04506 * 0.02562 * 14 13 12 30 30 H 1.08002 * 126.03891 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1474 -2.2863 -3.6038 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1858 -4.8160 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 0.3638 -0.2944 3.1108 15 6 0.2789 0.5394 4.1418 16 7 1.4098 1.3423 4.1352 17 1 1.6130 2.0457 4.7716 18 6 2.1779 0.9725 3.0916 19 8 3.2494 1.4628 2.7833 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 0.7095 1.1617 -3.4844 27 1 3.1301 -0.7208 1.2494 28 1 1.6767 -1.7489 1.2493 29 1 -0.3637 -1.0449 2.8390 30 1 -0.5299 0.5866 4.8559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306325633.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:56 Heat of formation + Delta-G solvation = -10.153210 kcal Electronic energy + Delta-G solvation = -14441.170891 eV Core-core repulsion = 12043.896073 eV Total energy + Delta-G solvation = -2397.274818 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.03507 -38.09533 -37.68896 -34.84418 -32.70879 -29.75600 -27.71253 -27.44413 -26.92592 -22.75448 -22.26112 -20.41666 -18.90504 -18.10048 -17.22376 -16.60382 -16.35355 -15.71097 -15.25250 -14.87820 -14.40119 -14.25783 -13.72509 -13.29823 -13.13553 -12.80641 -12.57605 -12.43309 -12.19938 -12.10477 -11.90117 -11.40111 -11.30589 -10.77983 -10.55263 -10.37969 -8.53800 -7.99415 -6.18413 1.42492 1.45666 1.55188 1.61268 1.71459 2.07080 2.46503 3.01719 3.22722 4.13004 4.51258 4.51808 4.67446 4.72074 4.87298 4.94250 4.98894 5.15080 5.22434 5.26877 5.45968 5.63599 5.67353 5.78572 6.05892 6.19361 6.29898 6.41999 6.72375 6.88784 7.49440 7.53234 8.98802 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.057426 B = 0.009237 C = 0.008906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.469397 B = 3030.705535 C = 3143.055282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.046 3.954 3 C -0.101 4.101 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.289 1.289 12 C 0.149 3.851 13 N -0.523 5.523 14 C -0.022 4.022 15 C -0.013 4.013 16 N -0.632 5.632 17 H 0.438 0.562 18 C 0.620 3.380 19 O -0.632 6.632 20 H 0.030 0.970 21 H 0.051 0.949 22 H 0.037 0.963 23 H 0.002 0.998 24 H 0.054 0.946 25 H 0.006 0.994 26 H 0.258 0.742 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.202 0.798 30 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 -3.097 11.941 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.045 3.955 3 C -0.159 4.159 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.545 5.545 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.215 1.215 12 C 0.028 3.972 13 N -0.241 5.241 14 C -0.145 4.145 15 C -0.136 4.136 16 N -0.275 5.275 17 H 0.280 0.720 18 C 0.321 3.679 19 O -0.515 6.515 20 H 0.049 0.951 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.021 0.979 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.218 0.782 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.876 -2.792 11.454 12.758 hybrid contribution 0.634 0.233 -0.880 1.109 sum -4.242 -2.558 10.575 11.677 Atomic orbital electron populations 1.21598 0.96526 0.99245 0.99786 1.18510 0.93898 0.91937 0.91200 1.21503 0.96710 0.99406 0.98263 1.21333 1.31533 1.12237 0.91165 0.92584 1.25590 0.95164 0.95584 1.01471 1.69984 1.37423 1.23634 1.23416 0.85610 0.78127 0.78654 0.79834 1.19144 1.20419 1.21536 1.21713 0.98087 0.95693 0.81744 1.45526 1.20249 1.32349 1.25968 1.22444 0.91213 1.05671 0.95181 1.22450 0.93470 0.94777 1.02869 1.43167 1.20556 1.35845 1.27910 0.72003 1.16645 0.85111 0.83263 0.82913 1.90981 1.23707 1.63375 1.73487 0.95120 0.92959 0.94408 0.97896 0.92744 0.97522 0.93238 0.92903 0.88332 0.78153 0.75335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 7.81 71.98 0.56 -4.61 16 2 C 0.05 2.23 0.57 -52.93 -0.03 2.20 16 3 C -0.10 -5.44 7.34 71.98 0.53 -4.91 16 4 C -0.52 -28.02 8.01 25.60 0.21 -27.81 16 5 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 6 C 0.02 1.14 5.15 84.65 0.44 1.58 16 7 N -0.91 -50.95 9.35 21.45 0.20 -50.75 16 8 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.15 6.25 4.95 86.38 0.43 6.67 16 13 N -0.52 -19.20 2.23 -656.18 -1.46 -20.66 16 14 C -0.02 -0.57 9.66 82.43 0.80 0.22 16 15 C -0.01 -0.25 11.95 82.43 0.98 0.73 16 16 N -0.63 -17.06 6.15 -323.81 -1.99 -19.05 16 17 H 0.44 9.14 8.96 -92.71 -0.83 8.31 16 18 C 0.62 24.61 7.33 179.07 1.31 25.92 16 19 O -0.63 -31.39 17.01 -4.67 -0.08 -31.47 16 20 H 0.03 1.24 6.38 -2.39 -0.02 1.22 16 21 H 0.05 2.71 6.07 -2.39 -0.01 2.70 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 24 H 0.05 3.16 6.07 -2.39 -0.01 3.15 16 25 H 0.01 0.31 6.21 -2.39 -0.01 0.29 16 26 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.05 2.43 8.07 -2.39 -0.02 2.41 16 28 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 29 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.23 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.97 246.73 4.23 -66.74 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.31 Total: 9.99 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.22 Total: -0.01 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -3.25 Total: -90.46 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.08 Total: -31.47 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -70.97 4.23 -66.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306325633.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.586 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds