Wall clock time and date at job start Mon Mar 30 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47091 * 269.99980 * 3 2 1 5 5 H 1.48496 * 109.47330 * 30.00167 * 3 2 1 6 6 H 1.48500 * 109.46922 * 150.00200 * 3 2 1 7 7 C 1.37876 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99877 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.33705 * 57.74643 * 9 7 2 11 11 C 1.54478 * 110.37214 * 180.02562 * 9 7 2 12 12 C 1.54502 * 104.06723 * 142.80888 * 11 9 7 13 13 C 1.54483 * 104.06059 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.37473 * 94.96939 * 13 12 11 15 15 C 1.53003 * 110.37120 * 217.19054 * 13 12 11 16 16 C 1.54267 * 110.48667 * 184.99802 * 15 13 12 17 17 C 1.53876 * 106.59870 * 217.71131 * 16 15 13 18 18 C 1.54261 * 106.59990 * 0.02562 * 17 16 15 19 19 C 1.54888 * 104.19672 * 23.60631 * 18 17 16 20 20 O 1.44426 * 110.37033 * 295.37988 * 9 7 2 21 21 H 0.97002 * 119.99670 * 359.97438 * 1 2 3 22 22 H 1.08993 * 110.51274 * 24.15876 * 11 9 7 23 23 H 1.09007 * 110.50962 * 261.45682 * 11 9 7 24 24 H 1.08999 * 110.51172 * 241.35655 * 12 11 9 25 25 H 1.09001 * 110.63030 * 118.69524 * 12 11 9 26 26 H 1.09004 * 110.54016 * 307.61092 * 15 13 12 27 27 H 1.08995 * 110.03032 * 98.42858 * 16 15 13 28 28 H 1.08998 * 110.03405 * 336.99797 * 16 15 13 29 29 H 1.08998 * 110.02768 * 119.28860 * 17 16 15 30 30 H 1.08994 * 110.03051 * 240.71540 * 17 16 15 31 31 H 1.09000 * 110.48928 * 142.28640 * 18 17 16 32 32 H 1.08999 * 110.48469 * 264.93049 * 18 17 16 33 33 H 1.09005 * 110.75648 * 80.37263 * 19 18 17 34 34 H 1.09004 * 110.75897 * 203.55715 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5888 -2.5543 -0.8646 11 6 2.2361 -3.6890 -0.0005 12 6 1.5560 -4.7397 0.9054 13 6 0.2406 -4.0600 1.3462 14 1 -0.5782 -4.3571 0.6907 15 6 -0.0838 -4.4187 2.7978 16 6 -1.4575 -3.8447 3.2017 17 6 -1.3259 -3.3751 4.6611 18 6 0.1234 -3.6795 5.0929 19 6 0.9139 -3.7294 3.7619 20 8 0.4975 -2.6446 1.2230 21 1 -0.4850 0.8401 0.0004 22 1 3.1971 -3.3892 0.4173 23 1 2.3629 -4.0799 -1.0102 24 1 2.1808 -4.9592 1.7712 25 1 1.3464 -5.6513 0.3458 26 1 -0.0657 -5.4995 2.9379 27 1 -2.2221 -4.6178 3.1258 28 1 -1.7134 -3.0017 2.5598 29 1 -1.5179 -2.3042 4.7274 30 1 -2.0266 -3.9203 5.2934 31 1 0.5054 -2.8849 5.7339 32 1 0.1753 -4.6410 5.6037 33 1 1.1529 -2.7235 3.4166 34 1 1.8208 -4.3237 3.8732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306795159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:45 Heat of formation + Delta-G solvation = -72.918608 kcal Electronic energy + Delta-G solvation = -14616.742843 eV Core-core repulsion = 12320.286657 eV Total energy + Delta-G solvation = -2296.456186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.77222 -36.52217 -32.58421 -30.79569 -29.92199 -28.18015 -26.75382 -23.91764 -21.43797 -20.02136 -19.73313 -18.93656 -16.65239 -15.30590 -14.98827 -14.79042 -14.40595 -13.90111 -13.10753 -12.84205 -12.54266 -12.30924 -11.82917 -11.52537 -10.90930 -10.80168 -10.67773 -10.58359 -10.52239 -10.29743 -10.06017 -9.99574 -9.87887 -9.67907 -9.42946 -9.02814 -8.55841 -7.97594 -5.98769 -4.10571 3.32032 3.38818 3.42310 4.44392 4.98571 5.03445 5.21406 5.23418 5.55367 5.67458 5.74575 5.88679 5.93263 5.96584 6.07988 6.09020 6.21198 6.31532 6.35395 6.36113 6.48207 6.56796 6.69441 6.76929 6.78073 6.88520 6.92206 6.96683 7.16984 7.56906 7.91789 8.28620 8.62525 9.01779 9.59628 11.09216 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.010434 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.408575 B = 2682.777602 C = 3106.029891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.205 3.795 10 H 0.024 0.976 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.071 3.929 14 H 0.045 0.955 15 C -0.081 4.081 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.124 4.124 19 C -0.115 4.115 20 O -0.343 6.343 21 H 0.260 0.740 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -7.971 5.855 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.150 3.850 10 H 0.042 0.958 11 C -0.184 4.184 12 C -0.188 4.188 13 C 0.011 3.989 14 H 0.063 0.937 15 C -0.099 4.099 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.162 4.162 19 C -0.152 4.152 20 O -0.262 6.262 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.724 -7.684 6.002 9.777 hybrid contribution 0.454 0.649 -0.162 0.808 sum -0.270 -7.035 5.839 9.147 Atomic orbital electron populations 1.70035 1.06003 1.26499 1.47588 1.25074 0.94775 0.99236 0.93794 0.86632 0.80034 0.83449 0.78068 1.20587 1.21114 1.19756 1.21038 0.92601 0.89850 1.52968 0.91988 1.20478 0.87688 0.92271 0.84583 0.95837 1.23022 1.00820 0.96868 0.97725 1.22956 0.98073 0.98222 0.99519 1.22675 0.95017 0.86911 0.94254 0.93701 1.21970 0.95263 0.98234 0.94447 1.22145 0.96461 1.00742 0.96238 1.22076 0.96415 1.00966 0.96334 1.22343 0.95700 1.00270 0.97853 1.22485 0.96504 1.02833 0.93384 1.89451 1.74996 1.17484 1.44283 0.92989 0.91961 0.93038 0.91980 0.92754 0.91490 0.93061 0.90421 0.92001 0.92933 0.92294 0.92672 0.89031 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.89 13.07 55.43 0.72 -25.17 16 2 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.99 8.77 -34.44 -0.30 -15.30 16 8 H 0.06 1.72 7.57 -52.49 -0.40 1.32 16 9 C 0.21 5.39 3.06 -27.11 -0.08 5.31 16 10 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.15 -3.14 6.62 -25.17 -0.17 -3.31 16 12 C -0.15 -2.79 6.52 -25.16 -0.16 -2.95 16 13 C 0.07 1.44 2.90 -25.95 -0.08 1.36 16 14 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.08 -1.40 2.71 -88.95 -0.24 -1.64 16 16 C -0.12 -1.99 6.33 -25.61 -0.16 -2.16 16 17 C -0.12 -1.83 6.80 -25.61 -0.17 -2.00 16 18 C -0.12 -1.84 6.83 -25.08 -0.17 -2.01 16 19 C -0.11 -2.00 5.70 -24.73 -0.14 -2.14 16 20 O -0.34 -8.82 9.08 -35.23 -0.32 -9.14 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.06 1.34 7.71 -51.93 -0.40 0.94 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 1.08 7.04 -51.93 -0.37 0.72 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.54 7.63 -51.93 -0.40 1.15 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.94 6.93 -51.93 -0.36 1.58 16 34 H 0.05 0.86 7.71 -51.93 -0.40 0.46 16 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -29.75 269.00 -8.02 -37.77 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.68 Total: -1.39 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.78 Total: -22.72 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.72 Total: -25.17 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.32 Total: -9.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.75 -8.02 -37.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306795159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.148 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds