Wall clock time and date at job start Mon Mar 30 2020 02:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47091 * 269.99980 * 3 2 1 5 5 H 1.48496 * 109.47330 * 30.00167 * 3 2 1 6 6 H 1.48500 * 109.46922 * 150.00200 * 3 2 1 7 7 C 1.37876 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99877 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.33705 * 57.74643 * 9 7 2 11 11 C 1.54478 * 110.37214 * 180.02562 * 9 7 2 12 12 C 1.54502 * 104.06723 * 142.80888 * 11 9 7 13 13 C 1.54483 * 104.06059 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.37473 * 94.96939 * 13 12 11 15 15 C 1.53003 * 110.37120 * 217.19054 * 13 12 11 16 16 C 1.54267 * 110.48667 * 184.99802 * 15 13 12 17 17 C 1.53876 * 106.59870 * 217.71131 * 16 15 13 18 18 C 1.54261 * 106.59990 * 0.02562 * 17 16 15 19 19 C 1.54888 * 104.19672 * 23.60631 * 18 17 16 20 20 O 1.44426 * 110.37033 * 295.37988 * 9 7 2 21 21 H 0.97002 * 119.99670 * 359.97438 * 1 2 3 22 22 H 1.08993 * 110.51274 * 24.15876 * 11 9 7 23 23 H 1.09007 * 110.50962 * 261.45682 * 11 9 7 24 24 H 1.08999 * 110.51172 * 241.35655 * 12 11 9 25 25 H 1.09001 * 110.63030 * 118.69524 * 12 11 9 26 26 H 1.09004 * 110.54016 * 307.61092 * 15 13 12 27 27 H 1.08995 * 110.03032 * 98.42858 * 16 15 13 28 28 H 1.08998 * 110.03405 * 336.99797 * 16 15 13 29 29 H 1.08998 * 110.02768 * 119.28860 * 17 16 15 30 30 H 1.08994 * 110.03051 * 240.71540 * 17 16 15 31 31 H 1.09000 * 110.48928 * 142.28640 * 18 17 16 32 32 H 1.08999 * 110.48469 * 264.93049 * 18 17 16 33 33 H 1.09005 * 110.75648 * 80.37263 * 19 18 17 34 34 H 1.09004 * 110.75897 * 203.55715 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5888 -2.5543 -0.8646 11 6 2.2361 -3.6890 -0.0005 12 6 1.5560 -4.7397 0.9054 13 6 0.2406 -4.0600 1.3462 14 1 -0.5782 -4.3571 0.6907 15 6 -0.0838 -4.4187 2.7978 16 6 -1.4575 -3.8447 3.2017 17 6 -1.3259 -3.3751 4.6611 18 6 0.1234 -3.6795 5.0929 19 6 0.9139 -3.7294 3.7619 20 8 0.4975 -2.6446 1.2230 21 1 -0.4850 0.8401 0.0004 22 1 3.1971 -3.3892 0.4173 23 1 2.3629 -4.0799 -1.0102 24 1 2.1808 -4.9592 1.7712 25 1 1.3464 -5.6513 0.3458 26 1 -0.0657 -5.4995 2.9379 27 1 -2.2221 -4.6178 3.1258 28 1 -1.7134 -3.0017 2.5598 29 1 -1.5179 -2.3042 4.7274 30 1 -2.0266 -3.9203 5.2934 31 1 0.5054 -2.8849 5.7339 32 1 0.1753 -4.6410 5.6037 33 1 1.1529 -2.7235 3.4166 34 1 1.8208 -4.3237 3.8732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306795159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:44 Heat of formation + Delta-G solvation = -90.195328 kcal Electronic energy + Delta-G solvation = -14617.492018 eV Core-core repulsion = 12320.286657 eV Total energy + Delta-G solvation = -2297.205361 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39393 -38.04151 -34.70436 -32.55692 -31.56521 -29.50625 -28.54550 -25.74650 -23.14686 -21.69953 -21.10119 -20.40270 -18.75987 -16.91739 -16.54118 -16.42525 -16.19150 -15.69229 -14.79204 -14.34230 -14.06889 -13.89528 -13.66807 -13.24217 -12.82424 -12.44044 -12.28112 -12.03683 -11.99386 -11.90269 -11.72558 -11.44594 -11.28542 -11.18463 -11.07159 -10.95369 -10.69873 -9.94251 -8.16958 -6.36762 1.38254 1.40217 1.50927 2.39296 3.05664 3.63830 3.69108 3.86351 3.97508 4.18195 4.25750 4.35820 4.53794 4.60511 4.70598 4.75161 4.84911 4.87204 4.91370 5.00031 5.05691 5.08678 5.15158 5.22641 5.31180 5.34435 5.48380 5.52069 5.59309 5.72986 5.74017 6.17803 6.58975 6.96285 7.38401 8.91735 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.010434 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.408575 B = 2682.777602 C = 3106.029891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.196 3.804 10 H -0.014 1.014 11 C -0.140 4.140 12 C -0.137 4.137 13 C 0.058 3.942 14 H 0.037 0.963 15 C -0.077 4.077 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.116 4.116 20 O -0.373 6.373 21 H 0.261 0.739 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 -9.528 7.186 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.181 4.181 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.140 3.860 10 H 0.004 0.996 11 C -0.178 4.178 12 C -0.175 4.175 13 C 0.000 4.000 14 H 0.055 0.945 15 C -0.095 4.095 16 C -0.157 4.157 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.153 4.153 20 O -0.293 6.293 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.109 -9.254 7.330 11.806 hybrid contribution 0.152 1.088 -0.604 1.254 sum 0.260 -8.166 6.726 10.582 Atomic orbital electron populations 1.70181 1.07735 1.27387 1.48913 1.25974 0.95633 1.03143 0.93301 0.85523 0.78715 0.78590 0.78601 1.19338 1.20880 1.18883 1.21461 0.92975 0.91394 1.52832 0.91820 1.20367 0.88101 0.93771 0.83745 0.99633 1.22905 0.99510 0.95902 0.99512 1.22909 0.96583 0.98125 0.99839 1.22981 0.95935 0.84507 0.96617 0.94518 1.22036 0.95210 1.00176 0.92076 1.22134 0.97175 0.99838 0.96581 1.22090 0.97759 1.00273 0.95623 1.22334 0.94470 1.02071 0.96534 1.22411 0.97748 1.00312 0.94878 1.89385 1.75255 1.21220 1.43454 0.93009 0.92223 0.91500 0.90195 0.89637 0.87862 0.90552 0.94947 0.93870 0.89858 0.92078 0.89526 0.93896 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.37 13.07 21.45 0.28 -56.09 16 2 C 0.02 1.24 5.43 84.65 0.46 1.70 16 3 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.55 -32.16 8.77 25.60 0.22 -31.94 16 8 H 0.06 3.59 7.57 -2.91 -0.02 3.56 16 9 C 0.20 10.67 3.06 30.35 0.09 10.76 16 10 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 11 C -0.14 -5.96 6.62 31.61 0.21 -5.75 16 12 C -0.14 -4.80 6.52 31.61 0.21 -4.59 16 13 C 0.06 2.36 2.90 31.10 0.09 2.45 16 14 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 15 C -0.08 -2.52 2.71 -9.71 -0.03 -2.54 16 16 C -0.12 -3.93 6.33 31.32 0.20 -3.73 16 17 C -0.12 -3.43 6.80 31.32 0.21 -3.22 16 18 C -0.12 -3.15 6.83 31.67 0.22 -2.93 16 19 C -0.12 -3.87 5.70 31.89 0.18 -3.68 16 20 O -0.37 -19.97 9.08 -148.98 -1.35 -21.32 16 21 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 22 H 0.06 2.53 7.71 -2.39 -0.02 2.51 16 23 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 24 H 0.08 2.52 7.04 -2.39 -0.02 2.51 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.03 1.33 7.63 -2.39 -0.02 1.32 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.85 6.93 -2.38 -0.02 1.83 16 34 H 0.07 2.09 7.71 -2.38 -0.02 2.07 16 Total: -1.00 -67.30 269.00 4.06 -63.23 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.05 Total: 10.41 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 2.07 Total: -43.49 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.35 Total: -21.32 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.30 4.06 -63.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306795159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.964 kcal (2) G-P(sol) polarization free energy of solvation -67.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds