Wall clock time and date at job start Mon Mar 30 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.27098 * 301.81960 * 9 7 2 11 11 C 1.54941 * 110.30993 * 179.72717 * 9 7 2 12 12 C 1.55311 * 100.94079 * 204.64015 * 11 9 7 13 13 C 1.54379 * 102.25038 * 34.13173 * 12 11 9 14 14 H 1.09001 * 109.82917 * 98.25288 * 13 12 11 15 15 C 1.53005 * 109.82903 * 219.13003 * 13 12 11 16 16 C 1.54266 * 110.03269 * 297.91105 * 15 13 12 17 17 C 1.54966 * 104.15832 * 217.14062 * 16 15 13 18 18 C 1.54892 * 102.78029 * 37.88549 * 17 16 15 19 19 C 1.53873 * 110.02897 * 180.69057 * 15 13 12 20 20 O 1.43237 * 107.59175 * 338.64673 * 13 12 11 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.08997 * 111.12656 * 322.55761 * 11 9 7 23 23 H 1.09003 * 111.12869 * 86.72200 * 11 9 7 24 24 H 1.08999 * 110.84831 * 152.32735 * 12 11 9 25 25 H 1.08999 * 110.84410 * 275.94684 * 12 11 9 26 26 H 1.08996 * 110.01734 * 59.30387 * 15 13 12 27 27 H 1.09004 * 110.48485 * 335.77889 * 16 15 13 28 28 H 1.08989 * 110.48706 * 98.42862 * 16 15 13 29 29 H 1.09010 * 110.71712 * 279.57266 * 17 16 15 30 30 H 1.08993 * 110.76609 * 156.22396 * 17 16 15 31 31 H 1.09003 * 110.48183 * 203.40750 * 18 17 16 32 32 H 1.08998 * 110.48681 * 80.76500 * 18 17 16 33 33 H 1.08996 * 110.03375 * 238.56487 * 19 15 13 34 34 H 1.08998 * 110.03883 * 359.95296 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.5955 -2.5569 0.8686 11 6 2.2404 -3.6915 -0.0081 12 6 1.3593 -4.8018 -0.6428 13 6 0.4923 -4.0025 -1.6391 14 1 0.9160 -4.0772 -2.6406 15 6 -0.9368 -4.5491 -1.6383 16 6 -0.9403 -6.0198 -2.1039 17 6 -2.2357 -6.1480 -2.9449 18 6 -2.2996 -4.7888 -3.6850 19 6 -1.8009 -3.7666 -2.6427 20 8 0.4900 -2.6355 -1.2112 21 1 -0.4851 0.8401 0.0004 22 1 3.1097 -3.4766 -0.6296 23 1 2.5407 -3.9593 1.0049 24 1 1.9748 -5.5344 -1.1649 25 1 0.7381 -5.2832 0.1126 26 1 -1.3648 -4.4729 -0.6388 27 1 -0.0645 -6.2273 -2.7188 28 1 -0.9734 -6.6914 -1.2462 29 1 -3.1039 -6.2770 -2.2985 30 1 -2.1556 -6.9711 -3.6548 31 1 -3.3242 -4.5633 -3.9806 32 1 -1.6435 -4.7972 -4.5554 33 1 -2.6487 -3.3116 -2.1308 34 1 -1.2025 -2.9970 -3.1301 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306795160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:46 Heat of formation + Delta-G solvation = -73.818353 kcal Electronic energy + Delta-G solvation = -14442.549113 eV Core-core repulsion = 12146.053910 eV Total energy + Delta-G solvation = -2296.495202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.84538 -36.67921 -32.57842 -30.91240 -29.89772 -28.21768 -26.80508 -23.91013 -21.02506 -20.59451 -19.90579 -18.90552 -16.48716 -15.64930 -15.41222 -14.64504 -14.35474 -13.99384 -13.04767 -12.95992 -12.32274 -12.10575 -11.80887 -11.61765 -11.00787 -10.83507 -10.82228 -10.67850 -10.51651 -10.43021 -10.23922 -10.20519 -10.06915 -9.66958 -9.55175 -9.02509 -8.52540 -7.77933 -5.96341 -4.09085 3.32236 3.39944 3.43736 4.45698 4.84930 5.00595 5.07016 5.21672 5.50906 5.57887 5.62647 5.81481 5.87645 5.93638 5.97270 5.99551 6.11544 6.15779 6.21330 6.31405 6.41408 6.49213 6.63627 6.65066 6.67727 6.79170 6.88696 6.94418 7.08500 7.64648 7.93581 8.32686 8.72454 9.10178 9.61656 11.11077 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.008597 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.123660 B = 3256.256806 C = 3705.778481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.210 3.790 10 H 0.026 0.974 11 C -0.149 4.149 12 C -0.151 4.151 13 C 0.082 3.918 14 H 0.055 0.945 15 C -0.097 4.097 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.111 4.111 20 O -0.355 6.355 21 H 0.259 0.741 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -10.243 -3.997 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.155 3.845 10 H 0.044 0.956 11 C -0.186 4.186 12 C -0.189 4.189 13 C 0.023 3.977 14 H 0.073 0.927 15 C -0.116 4.116 16 C -0.155 4.155 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.148 4.148 20 O -0.274 6.274 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.514 -9.956 -4.089 11.053 hybrid contribution 0.508 0.711 0.102 0.880 sum -2.006 -9.246 -3.987 10.267 Atomic orbital electron populations 1.70053 1.05987 1.26331 1.47586 1.25078 0.94771 0.99233 0.93775 0.86585 0.80242 0.83809 0.77601 1.19672 1.20874 1.20935 1.21171 0.92688 0.90217 1.52972 0.92017 1.20500 0.87342 0.92089 0.84562 0.95606 1.23329 0.99436 0.96323 0.99546 1.23127 0.98532 0.98301 0.98930 1.22577 0.92502 0.85983 0.96670 0.92741 1.22132 0.96853 0.93294 0.99351 1.22390 0.97467 0.96578 0.99023 1.22497 0.98030 0.97162 0.98495 1.22406 1.00332 0.95238 0.98357 1.22036 0.99183 0.97611 0.95986 1.88817 1.74259 1.20340 1.44017 0.93073 0.91799 0.92194 0.92197 0.91842 0.91322 0.91833 0.92226 0.91911 0.92292 0.92381 0.92126 0.92293 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.09 13.04 55.43 0.72 -25.37 16 2 C 0.08 2.23 5.43 -17.82 -0.10 2.13 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -15.32 8.80 -34.44 -0.30 -15.63 16 8 H 0.06 1.73 7.76 -52.49 -0.41 1.32 16 9 C 0.21 5.57 3.23 -26.86 -0.09 5.48 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.15 -3.17 6.53 -24.48 -0.16 -3.33 16 12 C -0.15 -2.77 5.95 -24.78 -0.15 -2.92 16 13 C 0.08 1.67 2.71 -26.01 -0.07 1.60 16 14 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.10 -1.73 2.57 -89.50 -0.23 -1.96 16 16 C -0.12 -1.64 5.78 -25.03 -0.14 -1.79 16 17 C -0.12 -1.57 6.91 -24.70 -0.17 -1.74 16 18 C -0.13 -1.74 6.83 -25.07 -0.17 -1.91 16 19 C -0.11 -1.94 6.26 -25.61 -0.16 -2.10 16 20 O -0.35 -9.37 9.95 -35.23 -0.35 -9.72 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.10 7.85 -51.93 -0.41 0.69 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 28 H 0.06 0.77 8.14 -51.94 -0.42 0.35 16 29 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.43 7.51 -51.93 -0.39 1.04 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -30.41 271.70 -8.11 -38.52 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.81 Total: -2.07 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.74 Total: -22.16 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.72 Total: -25.37 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.35 Total: -9.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.41 -8.11 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306795160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.303 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds