Wall clock time and date at job start Mon Mar 30 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.27098 * 301.81960 * 9 7 2 11 11 C 1.54941 * 110.30993 * 179.72717 * 9 7 2 12 12 C 1.55311 * 100.94079 * 204.64015 * 11 9 7 13 13 C 1.54379 * 102.25038 * 34.13173 * 12 11 9 14 14 H 1.09001 * 109.82917 * 98.25288 * 13 12 11 15 15 C 1.53005 * 109.82903 * 219.13003 * 13 12 11 16 16 C 1.54266 * 110.03269 * 297.91105 * 15 13 12 17 17 C 1.54966 * 104.15832 * 217.14062 * 16 15 13 18 18 C 1.54892 * 102.78029 * 37.88549 * 17 16 15 19 19 C 1.53873 * 110.02897 * 180.69057 * 15 13 12 20 20 O 1.43237 * 107.59175 * 338.64673 * 13 12 11 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.08997 * 111.12656 * 322.55761 * 11 9 7 23 23 H 1.09003 * 111.12869 * 86.72200 * 11 9 7 24 24 H 1.08999 * 110.84831 * 152.32735 * 12 11 9 25 25 H 1.08999 * 110.84410 * 275.94684 * 12 11 9 26 26 H 1.08996 * 110.01734 * 59.30387 * 15 13 12 27 27 H 1.09004 * 110.48485 * 335.77889 * 16 15 13 28 28 H 1.08989 * 110.48706 * 98.42862 * 16 15 13 29 29 H 1.09010 * 110.71712 * 279.57266 * 17 16 15 30 30 H 1.08993 * 110.76609 * 156.22396 * 17 16 15 31 31 H 1.09003 * 110.48183 * 203.40750 * 18 17 16 32 32 H 1.08998 * 110.48681 * 80.76500 * 18 17 16 33 33 H 1.08996 * 110.03375 * 238.56487 * 19 15 13 34 34 H 1.08998 * 110.03883 * 359.95296 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.5955 -2.5569 0.8686 11 6 2.2404 -3.6915 -0.0081 12 6 1.3593 -4.8018 -0.6428 13 6 0.4923 -4.0025 -1.6391 14 1 0.9160 -4.0772 -2.6406 15 6 -0.9368 -4.5491 -1.6383 16 6 -0.9403 -6.0198 -2.1039 17 6 -2.2357 -6.1480 -2.9449 18 6 -2.2996 -4.7888 -3.6850 19 6 -1.8009 -3.7666 -2.6427 20 8 0.4900 -2.6355 -1.2112 21 1 -0.4851 0.8401 0.0004 22 1 3.1097 -3.4766 -0.6296 23 1 2.5407 -3.9593 1.0049 24 1 1.9748 -5.5344 -1.1649 25 1 0.7381 -5.2832 0.1126 26 1 -1.3648 -4.4729 -0.6388 27 1 -0.0645 -6.2273 -2.7188 28 1 -0.9734 -6.6914 -1.2462 29 1 -3.1039 -6.2770 -2.2985 30 1 -2.1556 -6.9711 -3.6548 31 1 -3.3242 -4.5633 -3.9806 32 1 -1.6435 -4.7972 -4.5554 33 1 -2.6487 -3.3116 -2.1308 34 1 -1.2025 -2.9970 -3.1301 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306795160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:46 Heat of formation + Delta-G solvation = -91.766003 kcal Electronic energy + Delta-G solvation = -14443.327381 eV Core-core repulsion = 12146.053910 eV Total energy + Delta-G solvation = -2297.273471 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.44814 -38.16200 -34.71035 -32.67360 -31.52063 -29.44677 -28.57372 -25.76553 -22.61579 -22.24513 -21.21452 -20.39787 -18.60480 -17.21436 -17.02128 -16.48046 -15.87350 -15.56925 -14.76295 -14.21146 -14.07146 -13.90494 -13.52295 -13.17165 -12.86642 -12.39704 -12.33944 -12.19410 -12.02760 -11.88433 -11.81087 -11.55522 -11.42508 -11.31353 -11.15245 -10.96580 -10.69588 -9.74879 -8.15644 -6.36898 1.38450 1.39716 1.52490 2.39671 3.04152 3.54761 3.77139 3.80980 3.96501 4.00778 4.24725 4.35583 4.52598 4.61214 4.70100 4.71694 4.80018 4.85352 4.92262 4.93794 5.02802 5.08947 5.12129 5.16963 5.27741 5.37425 5.46588 5.50645 5.57336 5.64407 5.75439 6.18620 6.62720 7.09720 7.39736 8.92518 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.008597 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.123660 B = 3256.256806 C = 3705.778481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.556 4.556 8 H 0.064 0.936 9 C 0.201 3.799 10 H -0.012 1.012 11 C -0.142 4.142 12 C -0.136 4.136 13 C 0.069 3.931 14 H 0.059 0.941 15 C -0.097 4.097 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.115 4.115 20 O -0.393 6.393 21 H 0.261 0.739 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -11.954 -4.763 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.594 4.594 8 H 0.082 0.918 9 C 0.146 3.854 10 H 0.006 0.994 11 C -0.179 4.179 12 C -0.173 4.173 13 C 0.011 3.989 14 H 0.077 0.923 15 C -0.116 4.116 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.153 4.153 20 O -0.313 6.313 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.814 -11.686 -4.856 12.785 hybrid contribution 0.269 1.237 0.334 1.309 sum -1.545 -10.449 -4.522 11.490 Atomic orbital electron populations 1.70201 1.07768 1.27296 1.48860 1.26009 0.95664 1.03259 0.93281 0.85446 0.79207 0.78827 0.77750 1.18469 1.20679 1.19980 1.21612 0.93096 0.91784 1.52883 0.91773 1.20386 0.87777 0.93719 0.83560 0.99404 1.23209 0.98562 0.95238 1.00930 1.23080 0.97970 0.97691 0.98579 1.22899 0.94837 0.83939 0.97248 0.92338 1.22096 0.94879 0.96215 0.98371 1.22366 0.98879 0.93384 1.00021 1.22496 0.97351 0.96917 0.98667 1.22375 1.01068 0.94787 0.97418 1.22032 0.98210 0.98039 0.97001 1.88725 1.74571 1.24341 1.43684 0.93037 0.91782 0.90596 0.88520 0.90696 0.93510 0.90746 0.90634 0.91335 0.89468 0.91046 0.91346 0.93927 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.70 13.04 21.45 0.28 -56.42 16 2 C 0.02 1.15 5.43 84.65 0.46 1.61 16 3 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.56 -32.78 8.80 25.60 0.23 -32.55 16 8 H 0.06 3.63 7.76 -2.91 -0.02 3.60 16 9 C 0.20 11.01 3.23 30.51 0.10 11.11 16 10 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 11 C -0.14 -5.96 6.53 32.05 0.21 -5.75 16 12 C -0.14 -4.71 5.95 31.86 0.19 -4.52 16 13 C 0.07 2.81 2.71 31.06 0.08 2.90 16 14 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.10 -3.41 2.57 -10.07 -0.03 -3.44 16 16 C -0.11 -2.73 5.78 31.70 0.18 -2.55 16 17 C -0.12 -2.54 6.91 31.91 0.22 -2.32 16 18 C -0.12 -3.07 6.83 31.67 0.22 -2.86 16 19 C -0.11 -4.12 6.26 31.32 0.20 -3.92 16 20 O -0.39 -21.54 9.95 -148.98 -1.48 -23.02 16 21 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 22 H 0.06 2.66 8.04 -2.39 -0.02 2.65 16 23 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.07 2.43 7.85 -2.39 -0.02 2.41 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.73 7.85 -2.38 -0.02 1.71 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.63 7.51 -2.39 -0.02 1.61 16 Total: -1.00 -68.41 271.70 3.92 -64.49 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.04 Total: 9.84 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 2.06 Total: -42.28 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.48 Total: -23.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.41 3.92 -64.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306795160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.278 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds