Wall clock time and date at job start Mon Mar 30 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46809 * 2 1 4 4 O 1.42902 * 109.47525 * 120.00083 * 2 1 3 5 5 C 1.53002 * 109.47267 * 240.00692 * 2 1 3 6 6 H 1.09006 * 109.46641 * 299.99968 * 5 2 1 7 7 C 1.52997 * 109.47028 * 59.99481 * 5 2 1 8 8 N 1.46491 * 109.47364 * 179.97438 * 5 2 1 9 9 C 1.36421 * 126.55752 * 300.02547 * 8 5 2 10 10 C 1.36216 * 107.19539 * 179.97438 * 9 8 5 11 11 N 1.32752 * 108.62120 * 359.97438 * 10 9 8 12 12 C 1.32991 * 109.22478 * 359.75774 * 11 10 9 13 13 C 1.39996 * 125.96384 * 180.23243 * 12 11 10 14 14 H 1.07993 * 119.99813 * 174.28561 * 13 12 11 15 15 C 1.40241 * 120.00057 * 354.28535 * 13 12 11 16 16 N 1.30688 * 119.99844 * 6.04036 * 15 13 12 17 17 Si 1.86801 * 119.99910 * 186.03583 * 15 13 12 18 18 H 1.48500 * 109.46823 * 94.98682 * 17 15 13 19 19 H 1.48504 * 109.46978 * 214.98423 * 17 15 13 20 20 H 1.48493 * 109.47114 * 334.98326 * 17 15 13 21 21 H 1.08997 * 109.46714 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46653 * 299.99453 * 1 2 3 23 23 H 1.08993 * 109.47436 * 59.99428 * 1 2 3 24 24 H 0.96697 * 113.99338 * 59.99980 * 4 2 1 25 25 H 1.09001 * 109.46758 * 180.02562 * 7 5 2 26 26 H 1.08997 * 109.47386 * 60.00270 * 7 5 2 27 27 H 1.09004 * 109.47149 * 300.00036 * 7 5 2 28 28 H 1.08000 * 126.39860 * 359.92123 * 9 8 5 29 29 H 1.08004 * 125.68607 * 180.02562 * 10 9 8 30 30 H 0.97000 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0401 -0.7211 -1.2493 6 1 1.6767 -1.7488 -1.2494 7 6 1.5300 0.0002 -2.4985 8 7 3.5050 -0.7206 -1.2497 9 6 4.3171 0.3755 -1.2494 10 6 5.6024 -0.0756 -1.2493 11 7 5.5857 -1.4030 -1.2489 12 6 4.3246 -1.8251 -1.2435 13 6 3.9046 -3.1606 -1.2368 14 1 2.8551 -3.3960 -1.1396 15 6 4.8466 -4.1925 -1.3563 16 7 6.1237 -3.9149 -1.3551 17 14 4.2761 -5.9640 -1.5171 18 1 4.2126 -6.3351 -2.9536 19 1 5.2332 -6.8578 -0.8168 20 1 2.9291 -6.1073 -0.9088 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.7211 -1.5952 1.2328 25 1 1.8930 -0.5138 -3.3885 26 1 1.8932 1.0279 -2.4984 27 1 0.4399 0.0001 -2.4984 28 1 4.0002 1.4080 -1.2501 29 1 6.4874 0.5434 -1.2487 30 1 6.7753 -4.6287 -1.4374 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307297704.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:09 Heat of formation + Delta-G solvation = 0.691416 kcal Electronic energy + Delta-G solvation = -14268.093514 eV Core-core repulsion = 11871.288954 eV Total energy + Delta-G solvation = -2396.804560 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.97839 -37.38152 -33.69214 -33.18369 -30.34004 -28.55966 -27.97487 -24.86690 -23.96932 -21.24130 -19.78032 -18.74687 -17.13118 -16.06460 -15.53206 -14.81541 -14.48523 -14.38185 -13.20411 -12.91917 -12.67614 -12.34613 -12.30465 -12.01517 -11.74570 -11.39957 -11.18513 -11.15466 -10.94260 -10.50658 -10.32285 -10.04847 -9.71676 -9.12057 -7.80408 -7.65304 -6.93126 -6.32161 -4.18281 3.08088 3.18229 3.20648 3.75233 4.04394 4.29621 4.75564 4.83112 4.92879 5.31057 5.33637 5.47229 5.60637 5.72898 5.82718 5.92329 6.04056 6.09762 6.33886 6.43856 6.49266 6.67893 7.22486 7.38656 7.71237 8.02084 8.20091 8.31377 8.68859 9.05776 9.44223 10.36788 10.62173 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.011792 C = 0.009809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.421824 B = 2374.019142 C = 2853.769155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 H 0.094 0.906 4 O -0.551 6.551 5 C 0.118 3.882 6 H 0.093 0.907 7 C -0.157 4.157 8 N -0.491 5.491 9 C -0.168 4.168 10 C -0.020 4.020 11 N -0.518 5.518 12 C 0.378 3.622 13 C -0.466 4.466 14 H 0.073 0.927 15 C 0.083 3.917 16 N -0.744 5.744 17 Si 0.907 3.093 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.266 1.266 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.373 0.627 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 3.373 -0.015 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.035 3.965 3 H 0.112 0.888 4 O -0.356 6.356 5 C 0.012 3.988 6 H 0.111 0.889 7 C -0.215 4.215 8 N -0.181 5.181 9 C -0.298 4.298 10 C -0.172 4.172 11 N -0.239 5.239 12 C 0.135 3.865 13 C -0.506 4.506 14 H 0.091 0.909 15 C -0.140 4.140 16 N -0.369 5.369 17 Si 0.732 3.268 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.190 1.190 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.220 0.780 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.229 3.445 0.083 9.851 hybrid contribution -1.247 -0.606 -0.270 1.412 sum -10.476 2.839 -0.187 10.855 Atomic orbital electron populations 1.22565 0.96532 1.02580 1.02535 1.22247 0.92099 0.96981 0.85123 0.88778 1.86614 1.77515 1.28734 1.42706 1.21614 0.81415 1.00931 0.94814 0.88896 1.22139 1.00317 1.01003 0.98088 1.45304 1.03458 1.06936 1.62384 1.21648 0.91859 0.90721 1.25543 1.22070 0.94056 0.93953 1.07164 1.71265 1.17526 1.07255 1.27819 1.20231 0.83477 0.87482 0.95321 1.17997 0.94174 0.87166 1.51239 0.90881 1.25659 0.94417 1.00200 0.93720 1.70026 1.01009 1.33268 1.32589 0.86354 0.79315 0.82357 0.78809 1.19859 1.20337 1.18990 0.92186 0.91939 0.91354 0.77995 0.91861 0.92398 0.91818 0.85315 0.85180 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.18 37.16 0.34 -1.83 16 2 C 0.10 1.54 3.12 -26.73 -0.08 1.45 16 3 H 0.09 1.57 7.96 -51.93 -0.41 1.16 16 4 O -0.55 -10.20 13.20 -35.23 -0.47 -10.67 16 5 C 0.12 2.16 2.74 -67.94 -0.19 1.98 16 6 H 0.09 1.72 6.70 -51.93 -0.35 1.37 16 7 C -0.16 -2.40 8.90 37.16 0.33 -2.07 16 8 N -0.49 -11.70 2.53 -108.88 -0.28 -11.98 16 9 C -0.17 -4.00 10.64 -16.24 -0.17 -4.17 16 10 C -0.02 -0.53 11.85 -17.88 -0.21 -0.74 16 11 N -0.52 -15.57 9.43 -12.72 -0.12 -15.69 16 12 C 0.38 10.71 7.43 -155.59 -1.16 9.55 16 13 C -0.47 -12.75 9.01 -38.17 -0.34 -13.10 16 14 H 0.07 1.82 6.74 -52.49 -0.35 1.47 16 15 C 0.08 2.23 5.49 -17.29 -0.09 2.13 16 16 N -0.74 -21.32 11.92 55.56 0.66 -20.66 16 17 Si 0.91 19.36 29.57 -169.99 -5.03 14.33 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 24 H 0.37 5.86 9.04 45.56 0.41 6.27 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 27 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 28 H 0.13 2.65 8.06 -52.49 -0.42 2.22 16 29 H 0.13 3.06 8.06 -52.48 -0.42 2.63 16 30 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 LS Contribution 256.42 15.07 3.86 3.86 Total: -1.00 -33.27 256.42 -5.97 -39.24 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.03 Total: 8.34 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.58 Total: -6.79 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.27 Total: -48.33 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.47 Total: -10.67 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.27 -5.97 -39.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307297704.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.934 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds