Wall clock time and date at job start Mon Mar 30 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46809 * 2 1 4 4 O 1.42902 * 109.47525 * 120.00083 * 2 1 3 5 5 C 1.53002 * 109.47267 * 240.00692 * 2 1 3 6 6 H 1.09006 * 109.46641 * 299.99968 * 5 2 1 7 7 C 1.52997 * 109.47028 * 59.99481 * 5 2 1 8 8 N 1.46491 * 109.47364 * 179.97438 * 5 2 1 9 9 C 1.36421 * 126.55752 * 300.02547 * 8 5 2 10 10 C 1.36216 * 107.19539 * 179.97438 * 9 8 5 11 11 N 1.32752 * 108.62120 * 359.97438 * 10 9 8 12 12 C 1.32991 * 109.22478 * 359.75774 * 11 10 9 13 13 C 1.39996 * 125.96384 * 180.23243 * 12 11 10 14 14 H 1.07993 * 119.99813 * 174.28561 * 13 12 11 15 15 C 1.40241 * 120.00057 * 354.28535 * 13 12 11 16 16 N 1.30688 * 119.99844 * 6.04036 * 15 13 12 17 17 Si 1.86801 * 119.99910 * 186.03583 * 15 13 12 18 18 H 1.48500 * 109.46823 * 94.98682 * 17 15 13 19 19 H 1.48504 * 109.46978 * 214.98423 * 17 15 13 20 20 H 1.48493 * 109.47114 * 334.98326 * 17 15 13 21 21 H 1.08997 * 109.46714 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46653 * 299.99453 * 1 2 3 23 23 H 1.08993 * 109.47436 * 59.99428 * 1 2 3 24 24 H 0.96697 * 113.99338 * 59.99980 * 4 2 1 25 25 H 1.09001 * 109.46758 * 180.02562 * 7 5 2 26 26 H 1.08997 * 109.47386 * 60.00270 * 7 5 2 27 27 H 1.09004 * 109.47149 * 300.00036 * 7 5 2 28 28 H 1.08000 * 126.39860 * 359.92123 * 9 8 5 29 29 H 1.08004 * 125.68607 * 180.02562 * 10 9 8 30 30 H 0.97000 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0401 -0.7211 -1.2493 6 1 1.6767 -1.7488 -1.2494 7 6 1.5300 0.0002 -2.4985 8 7 3.5050 -0.7206 -1.2497 9 6 4.3171 0.3755 -1.2494 10 6 5.6024 -0.0756 -1.2493 11 7 5.5857 -1.4030 -1.2489 12 6 4.3246 -1.8251 -1.2435 13 6 3.9046 -3.1606 -1.2368 14 1 2.8551 -3.3960 -1.1396 15 6 4.8466 -4.1925 -1.3563 16 7 6.1237 -3.9149 -1.3551 17 14 4.2761 -5.9640 -1.5171 18 1 4.2126 -6.3351 -2.9536 19 1 5.2332 -6.8578 -0.8168 20 1 2.9291 -6.1073 -0.9088 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.7211 -1.5952 1.2328 25 1 1.8930 -0.5138 -3.3885 26 1 1.8932 1.0279 -2.4984 27 1 0.4399 0.0001 -2.4984 28 1 4.0002 1.4080 -1.2501 29 1 6.4874 0.5434 -1.2487 30 1 6.7753 -4.6287 -1.4374 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307297704.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:09 Heat of formation + Delta-G solvation = -23.436007 kcal Electronic energy + Delta-G solvation = -14269.139757 eV Core-core repulsion = 11871.288954 eV Total energy + Delta-G solvation = -2397.850803 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.86092 -38.80749 -35.33964 -35.04327 -31.86765 -30.56358 -29.31773 -26.84763 -25.31672 -22.75472 -21.77529 -20.48298 -18.89783 -17.75574 -17.21375 -16.39205 -15.98473 -15.79154 -14.85586 -14.58344 -14.38701 -14.06803 -13.71197 -13.27960 -13.11183 -12.92104 -12.86879 -12.53048 -12.45914 -12.27520 -11.87451 -11.62127 -11.18535 -11.02377 -9.72948 -9.68907 -8.96314 -8.29164 -6.23688 1.38602 1.43961 1.59052 1.87374 2.27498 2.62465 2.80934 3.49059 3.59269 3.71891 4.04810 4.19140 4.30937 4.36594 4.53618 4.70530 4.78395 4.86899 4.91092 4.98556 5.19159 5.24934 5.32191 5.43717 5.76040 6.24788 6.32960 6.71039 6.79455 7.05764 7.47707 8.36043 8.68301 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.011792 C = 0.009809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.421824 B = 2374.019142 C = 2853.769155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 H 0.088 0.912 4 O -0.579 6.579 5 C 0.106 3.894 6 H 0.089 0.911 7 C -0.149 4.149 8 N -0.487 5.487 9 C -0.140 4.140 10 C -0.067 4.067 11 N -0.568 5.568 12 C 0.342 3.658 13 C -0.492 4.492 14 H 0.089 0.911 15 C 0.030 3.970 16 N -0.798 5.798 17 Si 0.992 3.008 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.248 1.248 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.382 0.618 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.167 0.833 29 H 0.145 0.855 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 3.487 -0.184 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.039 3.961 3 H 0.106 0.894 4 O -0.386 6.386 5 C 0.002 3.998 6 H 0.107 0.893 7 C -0.207 4.207 8 N -0.175 5.175 9 C -0.272 4.272 10 C -0.218 4.218 11 N -0.290 5.290 12 C 0.096 3.904 13 C -0.531 4.531 14 H 0.107 0.893 15 C -0.188 4.188 16 N -0.424 5.424 17 Si 0.812 3.188 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.171 1.171 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.109 0.891 24 H 0.230 0.770 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.184 0.816 29 H 0.163 0.837 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.083 3.588 -0.085 12.605 hybrid contribution -0.409 -0.482 -0.206 0.665 sum -12.493 3.106 -0.291 12.876 Atomic orbital electron populations 1.22462 0.92571 1.03826 1.04117 1.22320 0.95039 0.95790 0.82974 0.89356 1.86573 1.78450 1.29674 1.43861 1.22091 0.78149 1.01826 0.97716 0.89323 1.22102 1.02910 1.00333 0.95341 1.45575 1.05760 1.05677 1.60483 1.22186 0.91147 0.92271 1.21601 1.22505 0.96086 0.93426 1.09805 1.71128 1.19611 1.09212 1.29041 1.20557 0.84019 0.88978 0.96816 1.18457 0.95200 0.87496 1.51960 0.89306 1.26778 0.94194 1.05323 0.92555 1.70189 1.02692 1.35093 1.34433 0.85069 0.79365 0.75412 0.78924 1.19273 1.20046 1.17137 0.91141 0.90987 0.89124 0.76963 0.93743 0.91869 0.87587 0.81574 0.83745 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.18 71.98 0.66 -2.67 16 2 C 0.10 2.90 3.12 30.60 0.10 3.00 16 3 H 0.09 2.70 7.96 -2.38 -0.02 2.68 16 4 O -0.58 -20.71 13.20 -148.98 -1.97 -22.67 16 5 C 0.11 3.67 2.74 44.99 0.12 3.79 16 6 H 0.09 3.13 6.70 -2.38 -0.02 3.12 16 7 C -0.15 -4.08 8.90 71.98 0.64 -3.44 16 8 N -0.49 -22.99 2.53 -498.39 -1.26 -24.25 16 9 C -0.14 -6.59 10.64 83.51 0.89 -5.70 16 10 C -0.07 -3.63 11.85 84.08 1.00 -2.63 16 11 N -0.57 -35.37 9.43 -194.17 -1.83 -37.20 16 12 C 0.34 19.76 7.43 133.59 0.99 20.76 16 13 C -0.49 -27.28 9.01 23.18 0.21 -27.07 16 14 H 0.09 4.41 6.74 -2.91 -0.02 4.39 16 15 C 0.03 1.61 5.49 85.35 0.47 2.08 16 16 N -0.80 -47.35 11.92 21.88 0.26 -47.09 16 17 Si 0.99 39.92 29.57 68.60 2.03 41.94 16 18 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.09 1.37 6.43 -2.39 -0.02 1.35 16 24 H 0.38 11.65 9.04 -74.06 -0.67 10.98 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.66 7.96 -2.39 -0.02 1.64 16 27 H 0.11 2.01 6.43 -2.38 -0.02 1.99 16 28 H 0.17 6.39 8.06 -2.91 -0.02 6.37 16 29 H 0.15 6.97 8.06 -2.91 -0.02 6.95 16 30 H 0.27 14.80 8.29 -92.71 -0.77 14.03 16 Total: -1.00 -74.85 256.42 2.78 -72.07 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.47 Total: 29.09 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.07 Total: -11.88 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -2.83 Total: -108.54 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.97 Total: -22.67 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -74.85 2.78 -72.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307297704.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.634 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds