Wall clock time and date at job start Mon Mar 30 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47184 * 2 1 4 4 O 1.42896 * 109.47067 * 120.00374 * 2 1 3 5 5 C 1.52997 * 109.47440 * 240.00431 * 2 1 3 6 6 H 1.09001 * 109.47186 * 59.99841 * 5 2 1 7 7 C 1.53002 * 109.47080 * 299.99846 * 5 2 1 8 8 N 1.46500 * 109.47519 * 180.02562 * 5 2 1 9 9 C 1.36418 * 126.55567 * 59.68406 * 8 5 2 10 10 C 1.36208 * 107.19621 * 180.26390 * 9 8 5 11 11 N 1.32763 * 108.62186 * 0.02562 * 10 9 8 12 12 C 1.32979 * 109.22134 * 0.02562 * 11 10 9 13 13 C 1.39996 * 125.96234 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99647 * 179.97438 * 13 12 11 15 15 C 1.40232 * 120.00009 * 0.02562 * 13 12 11 16 16 N 1.30687 * 120.00016 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47022 * 89.99828 * 17 15 13 19 19 H 1.48500 * 109.47196 * 209.99546 * 17 15 13 20 20 H 1.48495 * 109.47115 * 329.99835 * 17 15 13 21 21 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47491 * 299.99599 * 1 2 3 23 23 H 1.09006 * 109.46629 * 59.99807 * 1 2 3 24 24 H 0.96698 * 114.00224 * 59.99608 * 4 2 1 25 25 H 1.09002 * 109.47380 * 179.97438 * 7 5 2 26 26 H 1.08992 * 109.47255 * 300.00320 * 7 5 2 27 27 H 1.08999 * 109.46952 * 60.00333 * 7 5 2 28 28 H 1.08003 * 126.40028 * 0.24751 * 9 8 5 29 29 H 1.08007 * 125.69094 * 179.97438 * 10 9 8 30 30 H 0.97002 * 119.99673 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7211 -1.2492 6 1 1.6767 -0.2073 -2.1392 7 6 1.5301 -2.1637 -1.2493 8 7 3.5051 -0.7217 -1.2490 9 6 4.3172 -1.2649 -0.2969 10 6 5.6024 -1.0364 -0.6859 11 7 5.5858 -0.3752 -1.8370 12 6 4.3247 -0.1681 -2.2047 13 6 3.9047 0.4957 -3.3636 14 1 2.8504 0.6095 -3.5686 15 6 4.8529 1.0118 -4.2587 16 7 6.1285 0.8736 -4.0108 17 14 4.2924 1.8969 -5.8053 18 1 4.1402 3.3460 -5.5187 19 1 5.3024 1.7078 -6.8774 20 1 2.9892 1.3405 -6.2493 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.7209 -1.5952 1.2328 25 1 1.8931 -2.6773 -2.1396 26 1 1.8933 -2.6775 -0.3594 27 1 0.4401 -2.1637 -1.2494 28 1 4.0002 -1.7796 0.5981 29 1 6.4874 -1.3416 -0.1473 30 1 6.7843 1.2303 -4.6302 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307297756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:11 Heat of formation + Delta-G solvation = 2.096072 kcal Electronic energy + Delta-G solvation = -14261.177113 eV Core-core repulsion = 11864.433463 eV Total energy + Delta-G solvation = -2396.743649 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.01961 -37.60396 -33.37883 -33.16946 -30.33726 -28.59296 -28.17593 -24.91353 -24.18784 -20.86949 -19.78069 -18.82754 -17.04137 -16.06352 -15.46126 -15.29220 -14.51863 -14.35548 -13.15182 -12.96601 -12.66203 -12.37900 -12.12690 -11.98453 -11.85477 -11.43718 -11.16306 -11.12340 -10.94613 -10.51656 -10.33558 -10.08245 -9.69359 -9.12562 -7.81162 -7.63283 -6.90782 -6.30184 -4.16368 3.09182 3.18934 3.21181 3.78251 4.05404 4.29513 4.64810 4.83918 5.04522 5.16463 5.31178 5.48580 5.55347 5.72226 5.81920 5.89442 6.04150 6.16860 6.21335 6.52336 6.54161 6.74034 7.24733 7.41524 7.72839 7.86256 8.23151 8.32897 8.71143 9.07390 9.44965 10.38780 10.63773 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.011056 C = 0.009107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.278324 B = 2531.930876 C = 3073.887062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.095 3.905 3 H 0.100 0.900 4 O -0.551 6.551 5 C 0.118 3.882 6 H 0.099 0.901 7 C -0.163 4.163 8 N -0.496 5.496 9 C -0.147 4.147 10 C -0.032 4.032 11 N -0.517 5.517 12 C 0.369 3.631 13 C -0.467 4.467 14 H 0.073 0.927 15 C 0.083 3.917 16 N -0.745 5.745 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.266 1.266 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.365 0.635 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.414 -2.486 3.547 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.035 3.965 3 H 0.118 0.882 4 O -0.356 6.356 5 C 0.012 3.988 6 H 0.117 0.883 7 C -0.221 4.221 8 N -0.186 5.186 9 C -0.277 4.277 10 C -0.183 4.183 11 N -0.238 5.238 12 C 0.126 3.874 13 C -0.507 4.507 14 H 0.092 0.908 15 C -0.140 4.140 16 N -0.371 5.371 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.190 1.190 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.212 0.788 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.312 -1.655 3.211 9.988 hybrid contribution -1.240 -0.415 -0.302 1.342 sum -10.552 -2.070 2.909 11.139 Atomic orbital electron populations 1.22540 0.96392 1.02468 1.02715 1.22277 0.92202 0.97199 0.84786 0.88203 1.86664 1.77144 1.28270 1.43516 1.21552 0.81449 0.96516 0.99284 0.88344 1.22173 1.00310 0.96653 1.02927 1.45379 1.03484 1.48906 1.20826 1.21790 0.91383 1.15787 0.98748 1.22105 0.94246 1.04603 0.97391 1.71259 1.17394 1.22724 1.12382 1.20297 0.83564 0.93855 0.89712 1.18017 0.93686 1.35783 1.03199 0.90843 1.25650 0.94440 0.95328 0.98615 1.70023 1.00861 1.32911 1.33258 0.86371 0.79208 0.80019 0.81263 1.19754 1.20352 1.19025 0.92072 0.91908 0.91405 0.78850 0.91681 0.92449 0.91802 0.84638 0.85258 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.18 37.16 0.34 -1.79 16 2 C 0.10 1.51 3.57 -26.73 -0.10 1.42 16 3 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 4 O -0.55 -8.90 11.12 -35.23 -0.39 -9.30 16 5 C 0.12 2.14 2.95 -67.93 -0.20 1.94 16 6 H 0.10 1.83 6.69 -51.93 -0.35 1.48 16 7 C -0.16 -2.40 8.60 37.16 0.32 -2.08 16 8 N -0.50 -11.79 2.66 -108.88 -0.29 -12.08 16 9 C -0.15 -3.49 9.93 -16.24 -0.16 -3.65 16 10 C -0.03 -0.85 11.85 -17.88 -0.21 -1.06 16 11 N -0.52 -15.57 9.41 -12.72 -0.12 -15.69 16 12 C 0.37 10.51 7.43 -155.60 -1.16 9.35 16 13 C -0.47 -12.92 9.03 -38.17 -0.34 -13.26 16 14 H 0.07 1.86 6.71 -52.48 -0.35 1.51 16 15 C 0.08 2.23 5.50 -17.29 -0.10 2.13 16 16 N -0.75 -21.48 11.90 55.56 0.66 -20.82 16 17 Si 0.91 19.52 29.56 -169.99 -5.03 14.50 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 21 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.36 4.60 7.33 45.56 0.33 4.94 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.80 6.60 -51.93 -0.34 0.46 16 27 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 28 H 0.14 2.81 7.09 -52.48 -0.37 2.44 16 29 H 0.13 3.07 8.06 -52.48 -0.42 2.64 16 30 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 250.19 15.07 3.77 3.77 Total: -1.00 -33.11 250.19 -6.00 -39.11 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.00 Total: 7.50 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.60 Total: -6.99 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.25 Total: -48.59 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.39 Total: -9.30 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.11 -6.00 -39.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307297756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds