Wall clock time and date at job start Mon Mar 30 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 N 1.46501 * 109.47101 * 119.99994 * 2 1 3 5 5 C 1.36933 * 120.00320 * 298.35388 * 4 2 1 6 6 H 1.08005 * 119.99838 * 36.18714 * 5 4 2 7 7 C 1.38813 * 120.00519 * 216.18558 * 5 4 2 8 8 N 1.31611 * 120.00329 * 214.10643 * 7 5 4 9 9 Si 1.86801 * 119.99591 * 34.10260 * 7 5 4 10 10 H 1.48503 * 109.47020 * 95.31683 * 9 7 5 11 11 H 1.48499 * 109.47216 * 215.31932 * 9 7 5 12 12 H 1.48501 * 109.47143 * 335.32079 * 9 7 5 13 13 C 1.46503 * 119.99925 * 118.35617 * 4 2 1 14 14 N 1.46511 * 109.46895 * 275.92565 * 13 4 2 15 15 C 1.35487 * 126.97854 * 269.68228 * 14 13 4 16 16 N 1.30526 * 107.30391 * 179.83887 * 15 14 13 17 17 N 1.28598 * 109.67025 * 0.44091 * 16 15 14 18 18 C 1.30520 * 109.67413 * 359.71991 * 17 16 15 19 19 H 1.08997 * 109.47218 * 306.43238 * 1 2 3 20 20 H 1.09002 * 109.47503 * 66.43339 * 1 2 3 21 21 H 1.09002 * 109.47669 * 186.43628 * 1 2 3 22 22 H 1.09002 * 109.47554 * 240.00186 * 2 1 3 23 23 H 1.08997 * 109.47524 * 181.91416 * 3 2 1 24 24 H 1.09003 * 109.47231 * 301.92377 * 3 2 1 25 25 H 1.09006 * 109.46959 * 61.91609 * 3 2 1 26 26 H 0.97002 * 119.99930 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47177 * 155.92811 * 13 4 2 28 28 H 1.09001 * 109.47589 * 35.92201 * 13 4 2 29 29 H 1.08000 * 126.34746 * 359.97438 * 15 14 13 30 30 H 1.07996 * 126.34516 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7155 -0.2035 2.4396 6 1 0.7510 0.2465 2.6232 7 6 2.6482 -0.2880 3.4642 8 7 2.2488 -0.4779 4.7038 9 14 4.4704 -0.1322 3.0836 10 1 4.9017 1.2731 3.2944 11 1 5.2422 -1.0271 3.9829 12 1 4.7158 -0.5187 1.6709 13 6 2.8306 -1.9024 1.0620 14 7 1.9521 -3.0635 0.8981 15 6 1.4453 -3.8471 1.8803 16 7 0.7130 -4.7631 1.3072 17 7 0.7403 -4.6035 0.0314 18 6 1.4865 -3.5750 -0.2669 19 1 -0.3633 0.6103 0.8268 20 1 -0.3634 0.4109 -0.9419 21 1 -0.3634 -1.0212 0.1152 22 1 1.8933 -0.5138 -0.8900 23 1 3.1294 1.4426 -0.0343 24 1 1.6488 1.9662 -0.8722 25 1 1.7050 1.9463 0.9067 26 1 2.9006 -0.5373 5.4197 27 1 3.4406 -2.0317 1.9561 28 1 3.4784 -1.8110 0.1902 29 1 1.6141 -3.7335 2.9410 30 1 1.6945 -3.2014 -1.2586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308153276.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:45 Heat of formation + Delta-G solvation = 101.944875 kcal Electronic energy + Delta-G solvation = -14461.724620 eV Core-core repulsion = 12101.603491 eV Total energy + Delta-G solvation = -2360.121129 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.21485 -37.21299 -33.69953 -32.59623 -30.23426 -29.77281 -26.52780 -26.02089 -23.76799 -21.47255 -21.37390 -19.75927 -17.65541 -16.33814 -15.43380 -15.21693 -14.59257 -14.26165 -13.86948 -13.60040 -13.02678 -12.72544 -12.38745 -12.03085 -11.59830 -11.15772 -11.00054 -10.87564 -10.67297 -10.62413 -10.21599 -10.06953 -9.68665 -9.41736 -8.83557 -8.64492 -7.41593 -6.42112 -3.75359 2.60154 3.06797 3.20327 3.26865 3.45141 3.62824 4.18260 4.53277 4.93001 5.16646 5.26457 5.51893 5.54410 5.75510 5.88641 5.95814 6.08569 6.14955 6.30835 6.43240 6.49482 6.64790 6.86597 6.90756 6.91307 7.58581 7.69891 8.05969 8.57827 9.31039 9.45126 9.67491 10.71484 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.014997 C = 0.011668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.080510 B = 1866.580520 C = 2399.237192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 C -0.151 4.151 4 N -0.576 5.576 5 C -0.290 4.290 6 H 0.083 0.917 7 C 0.052 3.948 8 N -0.860 5.860 9 Si 0.844 3.156 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.337 3.663 14 N -0.470 5.470 15 C 0.173 3.827 16 N -0.326 5.326 17 N -0.318 5.318 18 C 0.132 3.868 19 H 0.058 0.942 20 H 0.042 0.958 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.269 0.731 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.209 0.791 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 1.106 -7.859 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.055 3.945 3 C -0.210 4.210 4 N -0.297 5.297 5 C -0.417 4.417 6 H 0.101 0.899 7 C -0.152 4.152 8 N -0.497 5.497 9 Si 0.669 3.331 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.192 1.192 13 C 0.129 3.871 14 N -0.166 5.166 15 C -0.117 4.117 16 N -0.167 5.167 17 N -0.160 5.160 18 C -0.158 4.158 19 H 0.077 0.923 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.225 0.775 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.264 0.026 -7.802 8.124 hybrid contribution 1.932 1.478 0.207 2.441 sum 4.196 1.504 -7.595 8.806 Atomic orbital electron populations 1.22106 0.97131 1.01544 1.00333 1.20551 0.93296 0.92440 0.88185 1.22068 1.00355 0.97257 1.01318 1.44730 1.60367 1.20828 1.03747 1.18595 0.99466 1.39377 0.84308 0.89913 1.25467 0.97665 0.97327 0.94789 1.70067 1.35156 1.43796 1.00648 0.87352 0.88278 0.78911 0.78512 1.20928 1.21484 1.19158 1.22401 0.87414 0.76133 1.01165 1.48834 1.37299 1.24420 1.06017 1.26454 0.96955 0.90446 0.97821 1.74102 1.19613 1.22648 1.00297 1.74037 1.18373 1.16188 1.07382 1.26185 1.00130 0.96075 0.93388 0.92330 0.93880 0.93345 0.93072 0.93591 0.93780 0.91423 0.92079 0.89056 0.90495 0.77469 0.78253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.07 37.15 0.34 -2.28 16 2 C 0.16 2.78 3.37 -67.94 -0.23 2.55 16 3 C -0.15 -2.47 9.17 37.16 0.34 -2.13 16 4 N -0.58 -11.67 2.25 -169.34 -0.38 -12.05 16 5 C -0.29 -6.99 8.46 -15.06 -0.13 -7.12 16 6 H 0.08 2.24 7.21 -52.48 -0.38 1.86 16 7 C 0.05 1.30 4.99 -17.43 -0.09 1.21 16 8 N -0.86 -23.14 13.97 55.49 0.78 -22.36 16 9 Si 0.84 18.51 26.28 -169.99 -4.47 14.05 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -5.39 5.94 56.52 0.34 -5.05 16 13 C 0.34 6.26 4.89 -63.74 -0.31 5.95 16 14 N -0.47 -8.81 2.99 -123.46 -0.37 -9.18 16 15 C 0.17 3.49 12.74 -89.95 -1.15 2.34 16 16 N -0.33 -7.04 12.21 29.69 0.36 -6.67 16 17 N -0.32 -6.57 12.21 29.69 0.36 -6.21 16 18 C 0.13 2.32 12.74 -89.95 -1.15 1.18 16 19 H 0.06 1.09 7.32 -51.93 -0.38 0.71 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.78 7.86 -51.93 -0.41 0.37 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.09 1.81 4.57 -51.93 -0.24 1.58 16 28 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 29 H 0.21 3.97 8.06 -52.49 -0.42 3.55 16 30 H 0.20 2.68 8.06 -52.49 -0.42 2.25 16 LS Contribution 255.05 15.07 3.84 3.84 Total: -1.00 -28.15 255.05 -6.19 -34.35 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.95 Total: 2.54 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.37 Total: 1.70 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.75 Total: -56.48 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.47 Total: 14.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.15 -6.19 -34.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308153276.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.291 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds