Wall clock time and date at job start Mon Mar 30 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 N 1.46501 * 109.47101 * 119.99994 * 2 1 3 5 5 C 1.36933 * 120.00320 * 298.35388 * 4 2 1 6 6 H 1.08005 * 119.99838 * 36.18714 * 5 4 2 7 7 C 1.38813 * 120.00519 * 216.18558 * 5 4 2 8 8 N 1.31611 * 120.00329 * 214.10643 * 7 5 4 9 9 Si 1.86801 * 119.99591 * 34.10260 * 7 5 4 10 10 H 1.48503 * 109.47020 * 95.31683 * 9 7 5 11 11 H 1.48499 * 109.47216 * 215.31932 * 9 7 5 12 12 H 1.48501 * 109.47143 * 335.32079 * 9 7 5 13 13 C 1.46503 * 119.99925 * 118.35617 * 4 2 1 14 14 N 1.46511 * 109.46895 * 275.92565 * 13 4 2 15 15 C 1.35487 * 126.97854 * 269.68228 * 14 13 4 16 16 N 1.30526 * 107.30391 * 179.83887 * 15 14 13 17 17 N 1.28598 * 109.67025 * 0.44091 * 16 15 14 18 18 C 1.30520 * 109.67413 * 359.71991 * 17 16 15 19 19 H 1.08997 * 109.47218 * 306.43238 * 1 2 3 20 20 H 1.09002 * 109.47503 * 66.43339 * 1 2 3 21 21 H 1.09002 * 109.47669 * 186.43628 * 1 2 3 22 22 H 1.09002 * 109.47554 * 240.00186 * 2 1 3 23 23 H 1.08997 * 109.47524 * 181.91416 * 3 2 1 24 24 H 1.09003 * 109.47231 * 301.92377 * 3 2 1 25 25 H 1.09006 * 109.46959 * 61.91609 * 3 2 1 26 26 H 0.97002 * 119.99930 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47177 * 155.92811 * 13 4 2 28 28 H 1.09001 * 109.47589 * 35.92201 * 13 4 2 29 29 H 1.08000 * 126.34746 * 359.97438 * 15 14 13 30 30 H 1.07996 * 126.34516 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7155 -0.2035 2.4396 6 1 0.7510 0.2465 2.6232 7 6 2.6482 -0.2880 3.4642 8 7 2.2488 -0.4779 4.7038 9 14 4.4704 -0.1322 3.0836 10 1 4.9017 1.2731 3.2944 11 1 5.2422 -1.0271 3.9829 12 1 4.7158 -0.5187 1.6709 13 6 2.8306 -1.9024 1.0620 14 7 1.9521 -3.0635 0.8981 15 6 1.4453 -3.8471 1.8803 16 7 0.7130 -4.7631 1.3072 17 7 0.7403 -4.6035 0.0314 18 6 1.4865 -3.5750 -0.2669 19 1 -0.3633 0.6103 0.8268 20 1 -0.3634 0.4109 -0.9419 21 1 -0.3634 -1.0212 0.1152 22 1 1.8933 -0.5138 -0.8900 23 1 3.1294 1.4426 -0.0343 24 1 1.6488 1.9662 -0.8722 25 1 1.7050 1.9463 0.9067 26 1 2.9006 -0.5373 5.4197 27 1 3.4406 -2.0317 1.9561 28 1 3.4784 -1.8110 0.1902 29 1 1.6141 -3.7335 2.9410 30 1 1.6945 -3.2014 -1.2586 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308153276.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:45 Heat of formation + Delta-G solvation = 86.993418 kcal Electronic energy + Delta-G solvation = -14462.372964 eV Core-core repulsion = 12101.603491 eV Total energy + Delta-G solvation = -2360.769473 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.74031 -38.74595 -35.17219 -34.39980 -31.82826 -31.30578 -27.86119 -27.68028 -25.39292 -23.01673 -22.87277 -21.28851 -19.29727 -17.89848 -17.04669 -16.83335 -16.14991 -15.79440 -15.37208 -15.09893 -14.66987 -14.26980 -13.95181 -13.45592 -13.05347 -12.68617 -12.67405 -12.39159 -12.27211 -12.07872 -11.72656 -11.60647 -11.21143 -10.98558 -10.68405 -10.19311 -9.11291 -8.32512 -5.64096 1.10776 1.32928 1.47140 1.50530 1.98277 2.08617 2.35918 2.88967 3.23735 3.79105 3.91353 4.04451 4.17991 4.35023 4.50994 4.60507 4.62224 4.88832 5.01178 5.07328 5.13143 5.14497 5.40988 5.47042 5.56478 5.83496 6.16026 6.25185 6.82491 7.48598 7.86895 7.92973 8.85776 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.014997 C = 0.011668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.080510 B = 1866.580520 C = 2399.237192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.154 3.846 3 C -0.146 4.146 4 N -0.586 5.586 5 C -0.273 4.273 6 H 0.037 0.963 7 C 0.004 3.996 8 N -0.915 5.915 9 Si 0.908 3.092 10 H -0.296 1.296 11 H -0.296 1.296 12 H -0.229 1.229 13 C 0.335 3.665 14 N -0.471 5.471 15 C 0.161 3.839 16 N -0.351 5.351 17 N -0.351 5.351 18 C 0.156 3.844 19 H 0.028 0.972 20 H 0.076 0.924 21 H 0.025 0.975 22 H 0.090 0.910 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.267 0.733 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.207 0.793 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 1.337 -10.943 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.049 3.951 3 C -0.204 4.204 4 N -0.307 5.307 5 C -0.402 4.402 6 H 0.055 0.945 7 C -0.196 4.196 8 N -0.555 5.555 9 Si 0.734 3.266 10 H -0.223 1.223 11 H -0.223 1.223 12 H -0.152 1.152 13 C 0.127 3.873 14 N -0.166 5.166 15 C -0.129 4.129 16 N -0.192 5.192 17 N -0.192 5.192 18 C -0.134 4.134 19 H 0.048 0.952 20 H 0.095 0.905 21 H 0.044 0.956 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.223 0.777 30 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.853 0.239 -10.938 11.599 hybrid contribution 1.318 1.405 1.101 2.219 sum 5.171 1.644 -9.837 11.234 Atomic orbital electron populations 1.22018 0.97581 0.99658 1.00930 1.20824 0.92898 0.93269 0.88095 1.22003 1.00651 0.96534 1.01217 1.44821 1.60717 1.21877 1.03239 1.18278 0.97524 1.38277 0.86124 0.94535 1.25962 1.01610 0.97668 0.94368 1.70174 1.36456 1.46952 1.01919 0.86329 0.82570 0.77634 0.80115 1.22341 1.22330 1.15185 1.22536 0.87048 0.75053 1.02634 1.48702 1.37402 1.24373 1.06091 1.26491 0.97285 0.90883 0.98259 1.74054 1.20370 1.23592 1.01162 1.73985 1.20167 1.18086 1.06920 1.27017 0.97542 0.94302 0.94516 0.95230 0.90526 0.95611 0.89214 0.93085 0.90652 0.94559 0.92372 0.90492 0.85969 0.77684 0.73454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.07 71.98 0.65 -3.98 16 2 C 0.15 4.74 3.37 44.99 0.15 4.89 16 3 C -0.15 -4.25 9.17 71.98 0.66 -3.59 16 4 N -0.59 -22.36 2.25 -689.67 -1.55 -23.91 16 5 C -0.27 -13.29 8.46 84.03 0.71 -12.58 16 6 H 0.04 2.09 7.21 -2.91 -0.02 2.07 16 7 C 0.00 0.22 4.99 84.86 0.42 0.64 16 8 N -0.92 -51.08 13.97 21.65 0.30 -50.78 16 9 Si 0.91 37.77 26.28 68.60 1.80 39.57 16 10 H -0.30 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.30 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.23 -8.00 5.94 99.48 0.59 -7.41 16 13 C 0.33 11.19 4.89 170.95 0.84 12.03 16 14 N -0.47 -16.36 2.99 -544.52 -1.63 -17.98 16 15 C 0.16 6.43 12.74 180.11 2.30 8.72 16 16 N -0.35 -15.00 12.21 -59.99 -0.73 -15.73 16 17 N -0.35 -13.81 12.21 -59.99 -0.73 -14.54 16 18 C 0.16 4.90 12.74 180.11 2.30 7.19 16 19 H 0.03 1.10 7.32 -2.39 -0.02 1.08 16 20 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.09 2.15 7.86 -2.39 -0.02 2.13 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.27 7.56 -2.38 -0.02 1.25 16 26 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.08 2.83 4.57 -2.39 -0.01 2.81 16 28 H 0.12 3.07 8.03 -2.39 -0.02 3.05 16 29 H 0.21 8.06 8.06 -2.91 -0.02 8.04 16 30 H 0.25 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -63.25 255.05 6.49 -56.76 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.00 Total: 13.29 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 8.03 Total: 13.32 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -4.34 Total: -122.94 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.80 Total: 39.57 kcal Total: -63.25 6.49 -56.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308153276.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.750 kcal (2) G-P(sol) polarization free energy of solvation -63.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds