Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.35353 * 126.75113 * 94.71520 * 15 14 12 17 17 N 1.35310 * 106.17524 * 179.85020 * 16 15 14 18 18 H 0.97001 * 125.86430 * 180.12123 * 17 16 15 19 19 N 1.28714 * 108.26607 * 0.41512 * 17 16 15 20 20 N 1.28635 * 110.17438 * 359.73827 * 19 17 16 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 26 26 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 27 27 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 28 28 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 29 29 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 30 30 H 1.08000 * 126.91203 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5397 -0.1370 4.1318 17 7 3.7982 -0.9609 5.1736 18 1 4.5710 -0.9130 5.7579 19 7 2.8455 -1.8228 5.2522 20 7 1.9765 -1.6092 4.3281 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 1.8762 -2.6150 0.3648 26 1 1.9060 -2.5657 2.1436 27 1 0.4385 -2.0742 1.2639 28 1 1.9297 1.0871 2.3124 29 1 0.5722 -0.0344 2.5727 30 1 4.1455 0.6907 3.7936 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308162258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = 104.230462 kcal Electronic energy + Delta-G solvation = -13907.434329 eV Core-core repulsion = 11547.412311 eV Total energy + Delta-G solvation = -2360.022019 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.04343 -37.20049 -33.49335 -32.59566 -31.21271 -28.51060 -26.76847 -25.12116 -23.78129 -22.98025 -21.02870 -19.30096 -18.02114 -16.11089 -15.98487 -15.01124 -14.78020 -14.14685 -13.90254 -13.37099 -12.54856 -12.48518 -11.76907 -11.31025 -11.09990 -11.00468 -10.84854 -10.72786 -10.54537 -10.36980 -10.21326 -9.95914 -9.84941 -9.04097 -8.79109 -8.36545 -7.11186 -5.98714 -4.02009 1.77431 2.75928 2.92516 3.32975 3.39432 3.43702 4.44264 4.68596 5.08434 5.29172 5.33677 5.39168 5.59018 6.04576 6.24658 6.38856 6.43602 6.58992 6.76626 6.90499 6.97045 7.03001 7.16021 7.51609 7.76881 7.86694 8.13382 8.41654 8.62147 8.66925 9.04037 9.62888 11.08437 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058157 B = 0.007343 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.336668 B = 3812.470087 C = 3940.034811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.531 5.531 13 C 0.035 3.965 14 C 0.132 3.868 15 C 0.005 3.995 16 C -0.035 4.035 17 N -0.399 5.399 18 H 0.444 0.556 19 N -0.095 5.095 20 N -0.261 5.261 21 H 0.032 0.968 22 H 0.088 0.912 23 H 0.008 0.992 24 H 0.260 0.740 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 0.235 11.289 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.113 4.113 14 C 0.002 3.998 15 C -0.132 4.132 16 C -0.188 4.188 17 N -0.120 5.120 18 H 0.289 0.711 19 N -0.076 5.076 20 N -0.130 5.130 21 H 0.051 0.949 22 H 0.107 0.893 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.556 -0.888 11.790 12.671 hybrid contribution 0.406 0.584 -1.038 1.258 sum 4.962 -0.303 10.752 11.846 Atomic orbital electron populations 1.22421 1.00774 0.99588 1.00557 1.19328 0.89857 0.94517 0.85778 0.94176 1.21121 1.30513 1.12429 0.89641 0.91953 1.24914 0.95270 0.95127 0.98948 1.69881 1.37123 1.23082 1.23363 0.86533 0.79238 0.79293 0.82556 1.20817 1.21322 1.19911 1.62387 1.59549 1.02320 1.01257 1.22232 0.97373 0.90698 1.01009 1.20301 0.96273 0.96994 0.86243 1.22210 0.95471 0.95781 0.99788 1.23497 1.00769 1.01452 0.93047 1.45021 1.20590 1.22138 1.24234 0.71140 1.78216 0.95906 1.13586 1.19850 1.75062 1.20468 1.14811 1.02644 0.94919 0.89337 0.97252 0.93033 0.91261 0.93342 0.96153 0.89768 0.93574 0.79009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.28 37.16 0.31 -3.90 16 2 C 0.21 5.24 2.34 -68.87 -0.16 5.08 16 3 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.59 7.94 -34.44 -0.27 -13.86 16 5 H 0.06 1.72 6.75 -52.49 -0.35 1.36 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.53 -11.52 4.73 -237.74 -1.13 -12.64 16 13 C 0.04 0.76 8.72 60.06 0.52 1.28 16 14 C 0.13 2.42 4.97 -4.98 -0.02 2.39 16 15 C 0.01 0.09 5.97 -82.77 -0.49 -0.40 16 16 C -0.04 -0.44 12.05 -17.05 -0.21 -0.65 16 17 N -0.40 -4.50 6.98 30.52 0.21 -4.28 16 18 H 0.44 2.82 8.96 -190.40 -1.71 1.11 16 19 N -0.10 -1.48 13.38 60.35 0.81 -0.67 16 20 N -0.26 -4.67 11.33 33.29 0.38 -4.30 16 21 H 0.03 0.78 6.38 -51.93 -0.33 0.45 16 22 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 23 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.07 1.55 6.53 -51.93 -0.34 1.21 16 26 H 0.05 0.99 6.35 -51.93 -0.33 0.66 16 27 H 0.02 0.43 6.28 -51.93 -0.33 0.11 16 28 H 0.08 1.41 8.00 -51.93 -0.42 0.99 16 29 H 0.05 0.88 6.94 -51.93 -0.36 0.52 16 30 H 0.19 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 247.57 15.07 3.73 3.73 Total: -1.00 -31.27 247.57 -5.62 -36.89 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.80 Total: -1.83 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.42 Total: -8.56 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.90 Total: -46.53 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.27 -5.62 -36.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308162258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.117 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds