Wall clock time and date at job start Mon Mar 30 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46640 * 59.99634 * 8 6 4 10 10 H 1.48494 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46704 * 300.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.30519 * 126.34567 * 305.02285 * 15 14 13 17 17 N 1.28601 * 109.67135 * 179.97438 * 16 15 14 18 18 C 1.30516 * 109.67237 * 359.97438 * 17 16 15 19 19 N 1.35495 * 107.31097 * 359.77181 * 18 17 16 20 20 H 0.96992 * 126.98659 * 180.22408 * 19 18 17 21 21 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 22 22 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 29 29 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 30 30 H 1.08002 * 126.34595 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8075 -1.1189 4.0076 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 1.6776 1.1284 -5.2189 17 7 2.0859 1.8115 -6.2290 18 6 3.3462 1.5559 -6.4519 19 7 3.7474 0.6605 -5.5174 20 1 4.6331 0.2778 -5.4183 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5526 27 1 2.7589 1.0462 -2.1182 28 1 3.5904 -0.9271 -3.3691 29 1 1.9183 -1.3564 -3.8030 30 1 3.9574 1.9825 -7.2335 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308165694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:10 Heat of formation + Delta-G solvation = 68.715929 kcal Electronic energy + Delta-G solvation = -13332.018920 eV Core-core repulsion = 10970.456876 eV Total energy + Delta-G solvation = -2361.562044 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.09445 -36.41745 -33.96859 -33.33615 -31.69425 -29.27541 -26.82514 -25.10506 -22.88249 -22.67488 -20.86743 -20.19702 -18.27431 -16.31502 -15.90017 -15.31261 -14.89252 -14.61433 -14.00979 -13.59217 -12.89274 -12.31308 -11.74975 -11.58919 -11.50607 -11.12696 -10.89108 -10.85272 -10.72916 -10.49234 -10.30013 -10.10145 -9.89215 -9.19396 -8.96679 -8.34099 -7.26536 -5.96165 -4.00160 1.78569 2.73407 2.89282 3.35259 3.39505 3.42223 4.32032 4.45951 4.71576 4.92273 5.32838 5.35077 5.37997 5.57003 5.73650 5.79698 6.07554 6.34285 6.46506 6.75802 6.89906 7.00272 7.13726 7.38198 7.77654 7.88471 8.28637 8.52557 8.61404 8.72554 9.06330 9.65014 11.10801 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.070766 B = 0.005562 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.577347 B = 5033.247353 C = 5204.014841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.068 3.932 14 C -0.033 4.033 15 C 0.195 3.805 16 N -0.292 5.292 17 N -0.299 5.299 18 C 0.142 3.858 19 N -0.584 5.584 20 H 0.429 0.571 21 H 0.008 0.992 22 H 0.028 0.972 23 H 0.088 0.912 24 H 0.260 0.740 25 H 0.326 0.674 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 -1.914 -13.888 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.063 4.063 14 C -0.073 4.073 15 C -0.075 4.075 16 N -0.133 5.133 17 N -0.139 5.139 18 C -0.148 4.148 19 N -0.197 5.197 20 H 0.268 0.732 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.142 0.858 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.678 -1.013 -13.752 14.912 hybrid contribution 1.178 -0.930 0.695 1.655 sum 6.856 -1.944 -13.056 14.874 Atomic orbital electron populations 1.22426 1.00515 0.99269 1.00707 1.19165 0.89789 0.94390 0.86220 0.94902 1.21110 1.30365 1.12465 0.89610 0.91997 1.24959 0.95349 0.95207 0.99042 1.69882 1.37190 1.23128 1.23458 0.86562 0.79097 0.79604 0.82087 1.20352 1.21470 1.20363 1.60850 1.58166 1.09135 1.03360 1.21762 0.99643 0.95600 0.89290 1.20142 1.03936 0.94895 0.88371 1.25167 0.83575 1.01244 0.97509 1.74304 1.24519 1.07838 1.06626 1.74252 1.08539 1.19821 1.11305 1.26439 0.95523 0.95542 0.97249 1.44186 1.13981 1.35888 1.25623 0.73201 0.97307 0.95289 0.89293 0.92992 0.85777 0.94628 0.91781 0.89345 0.88968 0.76455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.94 37.16 0.33 -3.83 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.17 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.50 -13.70 8.84 -34.44 -0.30 -14.00 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.88 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.69 -14.11 6.23 -107.94 -0.67 -14.78 16 13 C 0.07 1.21 5.45 -3.82 -0.02 1.19 16 14 C -0.03 -0.44 6.10 -27.88 -0.17 -0.61 16 15 C 0.19 2.65 7.56 -154.98 -1.17 1.48 16 16 N -0.29 -4.95 12.19 32.80 0.40 -4.55 16 17 N -0.30 -4.62 12.21 29.69 0.36 -4.26 16 18 C 0.14 1.45 13.19 -89.95 -1.19 0.27 16 19 N -0.58 -5.61 6.20 -11.36 -0.07 -5.68 16 20 H 0.43 2.37 8.96 -40.82 -0.37 2.01 16 21 H 0.01 0.18 7.45 -51.93 -0.39 -0.20 16 22 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.33 6.27 8.47 -39.29 -0.33 5.93 16 26 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 27 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.22 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -32.96 259.81 -7.10 -40.06 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.85 Total: 3.05 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.79 Total: -8.90 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.65 Total: -54.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.96 -7.10 -40.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.776 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds