Wall clock time and date at job start Mon Mar 30 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46640 * 59.99634 * 8 6 4 10 10 H 1.48494 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46704 * 300.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.46807 * 179.97438 * 14 13 12 16 16 N 1.30519 * 126.34567 * 305.02285 * 15 14 13 17 17 N 1.28601 * 109.67135 * 179.97438 * 16 15 14 18 18 C 1.30516 * 109.67237 * 359.97438 * 17 16 15 19 19 N 1.35495 * 107.31097 * 359.77181 * 18 17 16 20 20 H 0.96992 * 126.98659 * 180.22408 * 19 18 17 21 21 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 22 22 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 24 24 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 29 29 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 30 30 H 1.08002 * 126.34595 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8075 -1.1189 4.0076 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 6 2.6589 0.4055 -4.7518 16 7 1.6776 1.1284 -5.2189 17 7 2.0859 1.8115 -6.2290 18 6 3.3462 1.5559 -6.4519 19 7 3.7474 0.6605 -5.5174 20 1 4.6331 0.2778 -5.4183 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7089 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5526 27 1 2.7589 1.0462 -2.1182 28 1 3.5904 -0.9271 -3.3691 29 1 1.9183 -1.3564 -3.8030 30 1 3.9574 1.9825 -7.2335 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308165694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:10 Heat of formation + Delta-G solvation = 45.133926 kcal Electronic energy + Delta-G solvation = -13333.041513 eV Core-core repulsion = 10970.456876 eV Total energy + Delta-G solvation = -2362.584637 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.04813 -38.11956 -35.33435 -34.62619 -33.30386 -30.75509 -28.32125 -27.21472 -24.15861 -23.70662 -22.15132 -21.92192 -19.19123 -18.32531 -16.93112 -16.77494 -16.44758 -15.99165 -15.36105 -15.20634 -14.43000 -14.09181 -13.47790 -13.21408 -12.84885 -12.71718 -12.57491 -12.48601 -12.20757 -12.08585 -11.84501 -11.77423 -11.34495 -11.05259 -10.46705 -10.20711 -9.01406 -8.07280 -6.19480 0.89326 1.46305 1.48274 1.56009 1.88497 1.94569 2.46551 3.21149 3.34419 3.68683 4.08964 4.13474 4.21570 4.49436 4.56325 4.62873 4.74703 4.88455 4.99272 5.03946 5.09918 5.23327 5.41796 5.70302 5.81866 6.26860 6.33224 6.61099 6.82666 6.95812 7.50723 7.75333 8.98474 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.070766 B = 0.005562 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.577347 B = 5033.247353 C = 5204.014841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H -0.003 1.003 4 C -0.514 4.514 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.269 1.269 12 N -0.680 5.680 13 C 0.075 3.925 14 C -0.018 4.018 15 C 0.186 3.814 16 N -0.343 5.343 17 N -0.357 5.357 18 C 0.172 3.828 19 N -0.566 5.566 20 H 0.449 0.551 21 H 0.020 0.980 22 H 0.037 0.963 23 H 0.060 0.940 24 H 0.260 0.740 25 H 0.337 0.663 26 H 0.015 0.985 27 H 0.048 0.952 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -3.115 -14.755 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.310 5.310 13 C -0.056 4.056 14 C -0.058 4.058 15 C -0.085 4.085 16 N -0.184 5.184 17 N -0.196 5.196 18 C -0.118 4.118 19 N -0.181 5.181 20 H 0.293 0.707 21 H 0.039 0.961 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.154 0.846 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 7.420 -2.236 -14.641 16.565 hybrid contribution 0.697 -0.507 0.872 1.226 sum 8.116 -2.743 -13.769 16.216 Atomic orbital electron populations 1.22251 1.00163 0.99452 0.99851 1.18934 0.89978 0.92659 0.87824 0.98516 1.21431 1.30502 1.12581 0.90764 0.92052 1.25789 0.95457 0.95865 1.02149 1.70030 1.38139 1.24429 1.24052 0.85512 0.78666 0.78650 0.78156 1.19695 1.21328 1.19421 1.60693 1.57766 1.09488 1.03036 1.21670 0.98462 0.95319 0.90151 1.19955 1.05397 0.94366 0.86101 1.25025 0.84358 1.01186 0.97964 1.74194 1.26773 1.09399 1.08001 1.74149 1.11433 1.21769 1.12209 1.27389 0.94373 0.93302 0.96774 1.44083 1.14134 1.35292 1.24561 0.70677 0.96142 0.94428 0.92089 0.93061 0.84606 0.96659 0.93378 0.86733 0.87826 0.71333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 8.94 71.98 0.64 -7.19 16 2 C 0.21 11.00 2.57 44.17 0.11 11.12 16 3 H 0.00 -0.18 7.80 -2.39 -0.02 -0.20 16 4 C -0.51 -28.39 8.84 25.60 0.23 -28.17 16 5 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 6 C 0.01 0.29 5.30 84.65 0.45 0.74 16 7 N -0.93 -54.26 11.32 21.44 0.24 -54.02 16 8 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 N -0.68 -27.70 6.23 -495.42 -3.09 -30.78 16 13 C 0.07 2.65 5.45 86.30 0.47 3.12 16 14 C -0.02 -0.45 6.10 29.85 0.18 -0.27 16 15 C 0.19 4.80 7.56 137.98 1.04 5.85 16 16 N -0.34 -11.58 12.19 -50.15 -0.61 -12.19 16 17 N -0.36 -10.69 12.21 -59.99 -0.73 -11.42 16 18 C 0.17 3.01 13.19 180.11 2.37 5.39 16 19 N -0.57 -9.20 6.20 -189.86 -1.18 -10.38 16 20 H 0.45 3.25 8.96 -92.71 -0.83 2.42 16 21 H 0.02 0.92 7.45 -2.39 -0.02 0.90 16 22 H 0.04 1.74 8.13 -2.39 -0.02 1.72 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.34 12.56 8.47 -89.69 -0.76 11.80 16 26 H 0.02 0.60 7.44 -2.39 -0.02 0.58 16 27 H 0.05 1.83 8.05 -2.39 -0.02 1.81 16 28 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.27 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -73.23 259.81 1.73 -71.50 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -0.43 Total: 10.99 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.50 Total: -9.42 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.37 Total: -118.79 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.23 1.73 -71.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308165694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.635 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds