Wall clock time and date at job start Mon Mar 30 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47379 * 2 1 4 4 N 1.46902 * 109.46366 * 119.99806 * 2 1 3 5 5 C 1.46898 * 110.99933 * 272.77924 * 4 2 1 6 6 H 1.08995 * 109.47362 * 343.44143 * 5 4 2 7 7 C 1.52997 * 109.46806 * 103.44585 * 5 4 2 8 8 C 1.50709 * 109.47131 * 223.44035 * 5 4 2 9 9 H 1.07997 * 119.99977 * 354.86064 * 8 5 4 10 10 C 1.37878 * 119.99552 * 174.85795 * 8 5 4 11 11 N 1.31516 * 119.99795 * 162.53712 * 10 8 5 12 12 Si 1.86798 * 120.00324 * 342.53557 * 10 8 5 13 13 H 1.48497 * 109.47256 * 180.02562 * 12 10 8 14 14 H 1.48497 * 109.47380 * 300.00139 * 12 10 8 15 15 H 1.48503 * 109.47077 * 60.00176 * 12 10 8 16 16 C 1.50696 * 109.47258 * 239.99502 * 2 1 3 17 17 C 1.41380 * 126.80268 * 84.71569 * 16 2 1 18 18 C 1.35445 * 103.98823 * 179.88861 * 17 16 2 19 19 O 1.34044 * 106.44585 * 0.37053 * 18 17 16 20 20 N 1.20922 * 111.56418 * 359.74514 * 19 18 17 21 21 H 1.08997 * 109.47505 * 306.80078 * 1 2 3 22 22 H 1.09008 * 109.46841 * 66.79248 * 1 2 3 23 23 H 1.08997 * 109.47501 * 186.79336 * 1 2 3 24 24 H 1.00905 * 110.99413 * 148.82972 * 4 2 1 25 25 H 1.09002 * 109.47390 * 172.46058 * 7 5 4 26 26 H 1.09004 * 109.47232 * 292.45765 * 7 5 4 27 27 H 1.08998 * 109.47451 * 52.46050 * 7 5 4 28 28 H 0.97004 * 119.99681 * 354.90933 * 11 10 8 29 29 H 1.08009 * 128.00302 * 0.02562 * 17 16 2 30 30 H 1.08005 * 126.77981 * 180.13854 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 2.1322 0.2346 2.3334 6 1 2.1133 1.2609 1.9669 7 6 0.9599 0.0134 3.2914 8 6 3.4287 -0.0156 3.0600 9 1 4.0623 -0.8393 2.7658 10 6 3.8058 0.8070 4.1002 11 7 4.7303 0.4127 4.9484 12 14 3.0036 2.4815 4.3048 13 1 3.5808 3.1654 5.4898 14 1 3.2517 3.3009 3.0915 15 1 1.5409 2.3097 4.4955 16 6 2.0323 -0.7105 -1.2304 17 6 2.2164 -0.1510 -2.5156 18 6 2.6806 -1.1838 -3.2589 19 8 2.7401 -2.2437 -2.4404 20 7 2.3775 -1.9623 -1.3217 21 1 -0.3634 0.6156 0.8228 22 1 -0.3633 0.4050 -0.9446 23 1 -0.3634 -1.0204 0.1216 24 1 2.8999 -1.1509 1.0183 25 1 1.1128 0.6034 4.1951 26 1 0.0328 0.3222 2.8084 27 1 0.8989 -1.0429 3.5532 28 1 5.0940 -0.4844 4.8869 29 1 2.0319 0.8653 -2.8312 30 1 2.9464 -1.1593 -4.3054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308168497.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:04 Heat of formation + Delta-G solvation = 60.064701 kcal Electronic energy + Delta-G solvation = -13884.046420 eV Core-core repulsion = 11489.816479 eV Total energy + Delta-G solvation = -2394.229941 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.76450 -37.08453 -34.16969 -32.42466 -31.42439 -30.29967 -27.88367 -24.51266 -23.71594 -22.83410 -20.31422 -19.52215 -17.98849 -17.37258 -17.21693 -15.32120 -14.57664 -14.29712 -13.87003 -13.39713 -13.18913 -12.46258 -12.22827 -11.93468 -11.81156 -11.39985 -11.31373 -10.92674 -10.70198 -10.36074 -9.98391 -9.79194 -9.61908 -9.46483 -8.88473 -8.30491 -7.60551 -6.44817 -4.10103 1.65407 2.42653 3.38067 3.39995 3.40619 3.58982 4.36857 4.47810 4.57848 5.13779 5.23544 5.27088 5.45610 5.52010 5.73647 5.78278 6.01763 6.17567 6.24109 6.45518 6.53714 6.77384 6.89309 6.94330 7.51120 7.72199 8.07423 8.37117 8.41949 8.56339 8.91941 9.58313 10.90687 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043518 B = 0.008348 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.263937 B = 3353.305343 C = 3551.648817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.158 3.842 3 H 0.060 0.940 4 N -0.672 5.672 5 C 0.186 3.814 6 H 0.004 0.996 7 C -0.136 4.136 8 C -0.614 4.614 9 H 0.059 0.941 10 C 0.035 3.965 11 N -0.903 5.903 12 Si 1.042 2.958 13 H -0.285 1.285 14 H -0.286 1.286 15 H -0.271 1.271 16 C 0.020 3.980 17 C -0.231 4.231 18 C -0.072 4.072 19 O 0.096 5.904 20 N -0.345 5.345 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.344 0.656 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.048 0.952 28 H 0.269 0.731 29 H 0.169 0.831 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 1.054 -15.019 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.046 3.954 3 H 0.078 0.922 4 N -0.304 5.304 5 C 0.077 3.923 6 H 0.021 0.979 7 C -0.194 4.194 8 C -0.652 4.652 9 H 0.077 0.923 10 C -0.171 4.171 11 N -0.536 5.536 12 Si 0.870 3.130 13 H -0.211 1.211 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.140 4.140 17 C -0.253 4.253 18 C -0.153 4.153 19 O 0.029 5.971 20 N -0.047 5.047 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.164 0.836 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.186 0.814 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.169 1.178 -13.028 14.917 hybrid contribution 0.742 -0.083 -1.712 1.868 sum -6.427 1.095 -14.740 16.117 Atomic orbital electron populations 1.21807 0.93784 1.02678 1.00776 1.20084 0.95708 0.94625 0.84958 0.92188 1.60701 1.35444 1.31233 1.03070 1.19539 0.95245 0.89487 0.88023 0.97869 1.22173 0.96747 1.01226 0.99241 1.22294 1.05595 1.17611 1.19699 0.92325 1.25726 0.96033 1.03627 0.91706 1.70829 1.27964 1.20940 1.33880 0.84111 0.76544 0.75925 0.76422 1.21069 1.21218 1.19768 1.23983 1.01748 0.90671 0.97588 1.22724 1.07506 1.02028 0.93052 1.25951 1.03460 0.86775 0.99141 1.84881 1.62443 1.35212 1.14609 1.73907 1.15072 1.17059 0.98703 0.91676 0.93263 0.91972 0.83649 0.93137 0.95972 0.93300 0.92137 0.81392 0.77093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.41 37.16 0.35 -1.74 16 2 C 0.16 2.88 3.09 -68.87 -0.21 2.67 16 3 H 0.06 1.10 7.30 -51.93 -0.38 0.72 16 4 N -0.67 -14.92 6.14 -102.17 -0.63 -15.54 16 5 C 0.19 4.55 2.26 -68.86 -0.16 4.39 16 6 H 0.00 0.09 5.83 -51.93 -0.30 -0.21 16 7 C -0.14 -3.13 9.18 37.16 0.34 -2.79 16 8 C -0.61 -17.60 8.85 -34.44 -0.30 -17.90 16 9 H 0.06 1.82 7.67 -52.49 -0.40 1.42 16 10 C 0.03 1.02 5.28 -17.82 -0.09 0.92 16 11 N -0.90 -28.01 13.70 55.43 0.76 -27.25 16 12 Si 1.04 25.25 26.28 -169.99 -4.47 20.78 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.27 -6.08 5.75 56.52 0.33 -5.75 16 16 C 0.02 0.33 6.03 -82.10 -0.50 -0.16 16 17 C -0.23 -2.92 11.12 -39.38 -0.44 -3.35 16 18 C -0.07 -0.77 12.30 29.74 0.37 -0.40 16 19 O 0.10 1.40 11.20 17.17 0.19 1.59 16 20 N -0.34 -6.13 11.56 33.42 0.39 -5.75 16 21 H 0.06 1.03 6.81 -51.93 -0.35 0.68 16 22 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.34 8.19 7.18 -39.29 -0.28 7.91 16 25 H 0.05 1.19 4.83 -51.93 -0.25 0.94 16 26 H 0.02 0.44 6.80 -51.93 -0.35 0.09 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.27 8.35 8.73 -40.82 -0.36 7.99 16 29 H 0.17 1.64 8.06 -52.48 -0.42 1.21 16 30 H 0.21 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 252.02 15.07 3.80 3.80 Total: -1.00 -31.90 252.02 -4.27 -36.17 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.67 Total: 4.58 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.64 Total: -18.37 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.52 Total: -48.54 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.47 Total: 20.78 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.90 -4.27 -36.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308168497.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.230 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds