Wall clock time and date at job start Mon Mar 30 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47379 * 2 1 4 4 N 1.46902 * 109.46366 * 119.99806 * 2 1 3 5 5 C 1.46898 * 110.99933 * 272.77924 * 4 2 1 6 6 H 1.08995 * 109.47362 * 343.44143 * 5 4 2 7 7 C 1.52997 * 109.46806 * 103.44585 * 5 4 2 8 8 C 1.50709 * 109.47131 * 223.44035 * 5 4 2 9 9 H 1.07997 * 119.99977 * 354.86064 * 8 5 4 10 10 C 1.37878 * 119.99552 * 174.85795 * 8 5 4 11 11 N 1.31516 * 119.99795 * 162.53712 * 10 8 5 12 12 Si 1.86798 * 120.00324 * 342.53557 * 10 8 5 13 13 H 1.48497 * 109.47256 * 180.02562 * 12 10 8 14 14 H 1.48497 * 109.47380 * 300.00139 * 12 10 8 15 15 H 1.48503 * 109.47077 * 60.00176 * 12 10 8 16 16 C 1.50696 * 109.47258 * 239.99502 * 2 1 3 17 17 C 1.41380 * 126.80268 * 84.71569 * 16 2 1 18 18 C 1.35445 * 103.98823 * 179.88861 * 17 16 2 19 19 O 1.34044 * 106.44585 * 0.37053 * 18 17 16 20 20 N 1.20922 * 111.56418 * 359.74514 * 19 18 17 21 21 H 1.08997 * 109.47505 * 306.80078 * 1 2 3 22 22 H 1.09008 * 109.46841 * 66.79248 * 1 2 3 23 23 H 1.08997 * 109.47501 * 186.79336 * 1 2 3 24 24 H 1.00905 * 110.99413 * 148.82972 * 4 2 1 25 25 H 1.09002 * 109.47390 * 172.46058 * 7 5 4 26 26 H 1.09004 * 109.47232 * 292.45765 * 7 5 4 27 27 H 1.08998 * 109.47451 * 52.46050 * 7 5 4 28 28 H 0.97004 * 119.99681 * 354.90933 * 11 10 8 29 29 H 1.08009 * 128.00302 * 0.02562 * 17 16 2 30 30 H 1.08005 * 126.77981 * 180.13854 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 2.1322 0.2346 2.3334 6 1 2.1133 1.2609 1.9669 7 6 0.9599 0.0134 3.2914 8 6 3.4287 -0.0156 3.0600 9 1 4.0623 -0.8393 2.7658 10 6 3.8058 0.8070 4.1002 11 7 4.7303 0.4127 4.9484 12 14 3.0036 2.4815 4.3048 13 1 3.5808 3.1654 5.4898 14 1 3.2517 3.3009 3.0915 15 1 1.5409 2.3097 4.4955 16 6 2.0323 -0.7105 -1.2304 17 6 2.2164 -0.1510 -2.5156 18 6 2.6806 -1.1838 -3.2589 19 8 2.7401 -2.2437 -2.4404 20 7 2.3775 -1.9623 -1.3217 21 1 -0.3634 0.6156 0.8228 22 1 -0.3633 0.4050 -0.9446 23 1 -0.3634 -1.0204 0.1216 24 1 2.8999 -1.1509 1.0183 25 1 1.1128 0.6034 4.1951 26 1 0.0328 0.3222 2.8084 27 1 0.8989 -1.0429 3.5532 28 1 5.0940 -0.4844 4.8869 29 1 2.0319 0.8653 -2.8312 30 1 2.9464 -1.1593 -4.3054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308168497.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:04 Heat of formation + Delta-G solvation = 35.970245 kcal Electronic energy + Delta-G solvation = -13885.091234 eV Core-core repulsion = 11489.816479 eV Total energy + Delta-G solvation = -2395.274755 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.88850 -38.68845 -35.81251 -34.16433 -32.64602 -31.84968 -29.50253 -26.65500 -25.00940 -23.90401 -21.92074 -21.09343 -19.84584 -18.63989 -18.49112 -16.75669 -16.41567 -15.72827 -15.22085 -15.13058 -14.44600 -14.15799 -13.86954 -13.58622 -13.32091 -13.15515 -12.71993 -12.42159 -12.18919 -12.09788 -11.84173 -11.48180 -11.03759 -10.95745 -10.54088 -10.50851 -9.38044 -8.74513 -6.44384 0.70613 1.32524 1.44283 1.50825 1.70752 2.46827 2.54600 2.98597 3.15971 3.30345 3.89904 4.15700 4.35932 4.38439 4.50406 4.55775 4.72776 4.80039 4.86490 4.97289 5.02462 5.10950 5.17007 5.31667 5.62693 5.70907 5.94072 6.17853 6.56085 6.66454 7.34248 7.47003 8.55822 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043518 B = 0.008348 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.263937 B = 3353.305343 C = 3551.648817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.152 3.848 3 H 0.062 0.938 4 N -0.679 5.679 5 C 0.190 3.810 6 H 0.014 0.986 7 C -0.131 4.131 8 C -0.621 4.621 9 H 0.014 0.986 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 1.083 2.917 13 H -0.288 1.288 14 H -0.264 1.264 15 H -0.237 1.237 16 C -0.008 4.008 17 C -0.238 4.238 18 C -0.046 4.046 19 O 0.089 5.911 20 N -0.391 5.391 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.329 0.671 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.251 0.749 29 H 0.198 0.802 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 2.894 -17.299 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.042 3.958 3 H 0.079 0.921 4 N -0.310 5.310 5 C 0.080 3.920 6 H 0.031 0.969 7 C -0.189 4.189 8 C -0.658 4.658 9 H 0.032 0.968 10 C -0.215 4.215 11 N -0.569 5.569 12 Si 0.903 3.097 13 H -0.214 1.214 14 H -0.189 1.189 15 H -0.161 1.161 16 C -0.167 4.167 17 C -0.260 4.260 18 C -0.127 4.127 19 O 0.022 5.978 20 N -0.095 5.095 21 H 0.084 0.916 22 H 0.099 0.901 23 H 0.067 0.933 24 H 0.146 0.854 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.216 0.784 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -8.933 2.998 -15.331 17.995 hybrid contribution 1.356 -0.756 -1.141 1.927 sum -7.576 2.242 -16.472 18.269 Atomic orbital electron populations 1.21749 0.91805 1.02075 1.02584 1.20193 0.97189 0.94360 0.84097 0.92063 1.60706 1.34400 1.31304 1.04555 1.19437 0.93369 0.90346 0.88827 0.96878 1.22077 0.97628 1.00315 0.98859 1.22527 1.07163 1.16024 1.20134 0.96768 1.27306 0.95745 1.07295 0.91126 1.70966 1.29999 1.20177 1.35745 0.83637 0.77624 0.71320 0.77165 1.21363 1.18867 1.16124 1.24063 1.02882 0.91033 0.98683 1.23081 1.07823 1.03846 0.91216 1.26959 1.00502 0.84761 1.00506 1.84817 1.62095 1.36574 1.14292 1.73912 1.16893 1.18161 1.00497 0.91558 0.90088 0.93337 0.85420 0.93634 0.92577 0.94784 0.94007 0.78448 0.71659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 9.41 71.98 0.68 -2.95 16 2 C 0.15 5.37 3.09 44.17 0.14 5.51 16 3 H 0.06 2.13 7.30 -2.39 -0.02 2.12 16 4 N -0.68 -30.33 6.14 -477.16 -2.93 -33.25 16 5 C 0.19 9.17 2.26 44.17 0.10 9.27 16 6 H 0.01 0.63 5.83 -2.39 -0.01 0.62 16 7 C -0.13 -5.83 9.18 71.98 0.66 -5.17 16 8 C -0.62 -36.57 8.85 25.60 0.23 -36.34 16 9 H 0.01 0.93 7.67 -2.91 -0.02 0.91 16 10 C -0.02 -0.95 5.28 84.65 0.45 -0.50 16 11 N -0.93 -59.79 13.70 21.45 0.29 -59.50 16 12 Si 1.08 49.63 26.28 68.60 1.80 51.43 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 15 H -0.24 -9.56 5.75 99.48 0.57 -8.98 16 16 C -0.01 -0.27 6.03 43.58 0.26 0.00 16 17 C -0.24 -5.23 11.12 22.40 0.25 -4.98 16 18 C -0.05 -0.83 12.30 67.17 0.83 0.00 16 19 O 0.09 2.47 11.20 71.60 0.80 3.27 16 20 N -0.39 -13.82 11.56 -49.56 -0.57 -14.39 16 21 H 0.07 1.90 6.81 -2.39 -0.02 1.88 16 22 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.33 16.29 7.18 -89.69 -0.64 15.65 16 25 H 0.04 2.05 4.83 -2.39 -0.01 2.04 16 26 H 0.06 2.10 6.80 -2.38 -0.02 2.08 16 27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 29 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.27 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -72.72 252.02 3.31 -69.41 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.33 Total: 18.20 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.59 Total: -35.17 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.21 Total: -107.14 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: 0.80 Total: 3.27 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.80 Total: 51.43 kcal Total: -72.72 3.31 -69.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308168497.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.376 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds