Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 C 1.50700 * 109.47327 * 169.99950 * 14 12 2 16 16 C 1.34323 * 126.16776 * 94.99836 * 15 14 12 17 17 O 1.34750 * 107.11767 * 180.02562 * 16 15 14 18 18 C 1.33967 * 107.75256 * 359.97438 * 17 16 15 19 19 N 1.30256 * 108.76384 * 359.72854 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 24 24 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 25 25 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 26 26 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 27 27 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 28 28 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 29 29 H 1.07999 * 126.44483 * 0.02562 * 16 15 14 30 30 H 1.08008 * 125.61921 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4773 -0.5164 -3.5794 16 6 1.9617 -1.3868 -4.4631 17 8 2.9378 -1.6836 -5.3432 18 6 4.0308 -0.9946 -4.9888 19 7 3.7549 -0.2864 -3.9310 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9026 -0.5284 4.4375 24 1 0.3489 -1.9549 -1.3693 25 1 1.8133 -2.5258 -2.2044 26 1 1.7058 -2.6222 -0.4302 27 1 0.6814 0.1052 -2.6087 28 1 2.1025 1.1188 -2.2604 29 1 0.9541 -1.7756 -4.4673 30 1 4.9824 -1.0185 -5.4992 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308170145.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 43.912610 kcal Electronic energy + Delta-G solvation = -13960.844317 eV Core-core repulsion = 11565.913969 eV Total energy + Delta-G solvation = -2394.930348 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.14092 -37.59552 -34.66388 -32.66779 -30.87029 -29.13036 -27.00030 -25.27419 -23.84226 -22.52338 -20.93697 -19.30564 -17.32306 -16.64040 -16.36765 -15.37694 -14.97540 -14.59388 -14.27434 -13.57612 -13.24879 -12.92212 -12.31073 -12.15286 -11.54821 -11.28085 -11.22237 -10.98142 -10.76284 -10.38216 -10.20171 -10.02571 -9.52684 -9.06998 -8.74691 -8.56185 -7.34612 -6.04612 -4.02522 1.62783 2.88519 3.01511 3.26096 3.36954 3.39471 4.30686 4.40865 4.86451 5.10436 5.19015 5.29132 5.67083 5.81943 5.98537 6.04173 6.10965 6.17374 6.24297 6.31145 6.46326 6.52375 6.68623 6.86135 7.17307 7.63655 7.91241 7.91897 8.06641 8.67324 9.03836 9.57149 11.08661 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.060251 B = 0.007749 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.609753 B = 3612.291111 C = 3690.570326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.182 3.818 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.126 3.874 15 C 0.014 3.986 16 C -0.082 4.082 17 O -0.212 6.212 18 C 0.158 3.842 19 N -0.468 5.468 20 H 0.028 0.972 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.264 0.736 24 H 0.020 0.980 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.210 0.790 30 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 0.059 -15.550 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.075 3.925 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.239 5.239 13 C -0.118 4.118 14 C -0.003 4.003 15 C -0.106 4.106 16 C -0.153 4.153 17 O -0.098 6.098 18 C -0.069 4.069 19 N -0.197 5.197 20 H 0.047 0.953 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.227 0.773 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.125 0.384 -15.028 15.075 hybrid contribution -1.935 0.408 -0.145 1.982 sum -3.060 0.792 -15.173 15.499 Atomic orbital electron populations 1.22849 1.01679 1.01145 0.98976 1.19811 0.88672 0.95364 0.88692 0.94112 1.20922 1.31418 1.13771 0.87704 0.90027 1.24915 0.95951 0.96597 0.95798 1.69882 1.45791 1.40344 0.97849 0.86886 0.80445 0.83962 0.77011 1.20821 1.22384 1.19300 1.62108 1.58784 1.02281 1.00740 1.22333 0.96096 0.91663 1.01718 1.20379 0.95122 0.97749 0.87064 1.21806 0.90651 0.99381 0.98730 1.24752 0.94788 1.03251 0.92523 1.84443 1.20479 1.56842 1.48045 1.28088 0.92291 0.91680 0.94795 1.70379 1.14900 1.22789 1.11630 0.95301 0.93582 0.92306 0.92650 0.96191 0.93770 0.90172 0.93855 0.89640 0.77347 0.73824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 7.92 37.16 0.29 -3.72 16 2 C 0.18 4.33 1.90 -68.86 -0.13 4.20 16 3 H 0.04 1.01 6.99 -51.93 -0.36 0.65 16 4 C -0.50 -14.11 8.55 -34.44 -0.29 -14.40 16 5 H 0.08 2.53 7.35 -52.49 -0.39 2.15 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 8 Si 0.89 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 12 N -0.52 -10.93 4.69 -237.73 -1.12 -12.05 16 13 C 0.03 0.58 8.61 60.06 0.52 1.09 16 14 C 0.13 2.22 5.08 -4.98 -0.03 2.19 16 15 C 0.01 0.24 5.86 -82.81 -0.49 -0.25 16 16 C -0.08 -1.09 10.95 29.35 0.32 -0.77 16 17 O -0.21 -2.71 10.78 5.37 0.06 -2.65 16 18 C 0.16 1.95 13.23 52.09 0.69 2.64 16 19 N -0.47 -7.77 11.30 -11.17 -0.13 -7.90 16 20 H 0.03 0.52 6.91 -51.93 -0.36 0.16 16 21 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 22 H 0.06 1.22 6.33 -51.93 -0.33 0.90 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.35 6.21 -51.92 -0.32 0.03 16 25 H 0.04 0.75 6.33 -51.93 -0.33 0.42 16 26 H 0.08 1.71 6.86 -51.93 -0.36 1.36 16 27 H 0.04 0.68 7.06 -51.93 -0.37 0.31 16 28 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 29 H 0.21 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.25 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 242.80 15.07 3.66 3.66 Total: -1.00 -32.76 242.80 -3.52 -36.28 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.42 Total: -1.16 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.79 Total: -7.13 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.47 Total: -46.80 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.76 -3.52 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308170145.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.196 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds