Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 C 1.50700 * 109.47327 * 169.99950 * 14 12 2 16 16 C 1.34323 * 126.16776 * 94.99836 * 15 14 12 17 17 O 1.34750 * 107.11767 * 180.02562 * 16 15 14 18 18 C 1.33967 * 107.75256 * 359.97438 * 17 16 15 19 19 N 1.30256 * 108.76384 * 359.72854 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 24 24 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 25 25 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 26 26 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 27 27 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 28 28 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 29 29 H 1.07999 * 126.44483 * 0.02562 * 16 15 14 30 30 H 1.08008 * 125.61921 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4773 -0.5164 -3.5794 16 6 1.9617 -1.3868 -4.4631 17 8 2.9378 -1.6836 -5.3432 18 6 4.0308 -0.9946 -4.9888 19 7 3.7549 -0.2864 -3.9310 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.9026 -0.5284 4.4375 24 1 0.3489 -1.9549 -1.3693 25 1 1.8133 -2.5258 -2.2044 26 1 1.7058 -2.6222 -0.4302 27 1 0.6814 0.1052 -2.6087 28 1 2.1025 1.1188 -2.2604 29 1 0.9541 -1.7756 -4.4673 30 1 4.9824 -1.0185 -5.4992 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308170145.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 15.954219 kcal Electronic energy + Delta-G solvation = -13962.056684 eV Core-core repulsion = 11565.913969 eV Total energy + Delta-G solvation = -2396.142715 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.16642 -39.21476 -35.86737 -34.63132 -32.41682 -30.60511 -28.38029 -27.21965 -25.44292 -23.52438 -22.23303 -21.00190 -18.73249 -18.29343 -17.54337 -17.05204 -16.17365 -16.06038 -15.81479 -15.15332 -14.78437 -14.40179 -14.14553 -13.79821 -13.18217 -12.94927 -12.81706 -12.55629 -12.14875 -12.04457 -11.87974 -11.45556 -11.34948 -11.09200 -10.75121 -9.81243 -8.91841 -8.27027 -6.29934 0.63980 1.30018 1.37198 1.47028 1.78578 2.10205 2.33018 3.07185 3.31137 3.44877 4.00016 4.10291 4.40644 4.42648 4.50412 4.61347 4.64662 4.72056 4.79422 4.92906 5.00674 5.07562 5.20861 5.41205 5.46243 5.63500 6.03112 6.40513 6.68753 6.76085 6.90814 7.34535 8.90244 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.060251 B = 0.007749 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.609753 B = 3612.291111 C = 3690.570326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.186 3.814 3 H 0.031 0.969 4 C -0.503 4.503 5 H 0.034 0.966 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.299 1.299 11 H -0.249 1.249 12 N -0.542 5.542 13 C 0.039 3.961 14 C 0.131 3.869 15 C -0.024 4.024 16 C -0.062 4.062 17 O -0.210 6.210 18 C 0.176 3.824 19 N -0.522 5.522 20 H 0.066 0.934 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.265 0.735 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.243 0.757 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 0.756 -17.973 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 H 0.048 0.952 4 C -0.542 4.542 5 H 0.052 0.948 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.227 1.227 11 H -0.173 1.173 12 N -0.266 5.266 13 C -0.109 4.109 14 C 0.003 3.997 15 C -0.143 4.143 16 C -0.134 4.134 17 O -0.096 6.096 18 C -0.050 4.050 19 N -0.251 5.251 20 H 0.084 0.916 21 H 0.055 0.945 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.259 0.741 30 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -2.623 1.080 -17.482 17.710 hybrid contribution -1.334 0.092 0.508 1.430 sum -3.957 1.173 -16.974 17.468 Atomic orbital electron populations 1.22693 0.99216 1.01762 1.00293 1.19566 0.90447 0.94146 0.88073 0.95159 1.21176 1.30407 1.12457 0.90151 0.94816 1.25803 0.97589 1.00075 0.95253 1.70048 1.47955 1.42635 0.98555 0.85804 0.79051 0.79891 0.77299 1.18997 1.22731 1.17272 1.61921 1.59918 1.03299 1.01435 1.22212 0.97250 0.90442 1.00953 1.20303 0.96846 0.96535 0.86003 1.21701 0.91241 1.01692 0.99640 1.25245 0.95763 1.01323 0.91035 1.84490 1.20614 1.56698 1.47818 1.29052 0.93205 0.89439 0.93353 1.70319 1.15734 1.25129 1.13942 0.91564 0.94483 0.92111 0.92572 0.94172 0.91605 0.93846 0.91269 0.91019 0.74095 0.69396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.26 7.92 71.98 0.57 -6.69 16 2 C 0.19 8.74 1.90 44.17 0.08 8.82 16 3 H 0.03 1.49 6.99 -2.39 -0.02 1.47 16 4 C -0.50 -29.30 8.55 25.60 0.22 -29.08 16 5 H 0.03 2.22 7.35 -2.91 -0.02 2.20 16 6 C 0.01 0.56 5.45 84.66 0.46 1.02 16 7 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 8 Si 0.95 45.10 24.37 68.60 1.67 46.77 16 9 H -0.26 -11.72 6.87 99.48 0.68 -11.04 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.25 -10.91 6.53 99.48 0.65 -10.26 16 12 N -0.54 -22.64 4.69 -906.05 -4.25 -26.90 16 13 C 0.04 1.47 8.61 127.69 1.10 2.57 16 14 C 0.13 4.39 5.08 85.56 0.43 4.82 16 15 C -0.02 -0.73 5.86 41.26 0.24 -0.49 16 16 C -0.06 -1.44 10.95 66.92 0.73 -0.71 16 17 O -0.21 -4.65 10.78 -3.71 -0.04 -4.69 16 18 C 0.18 3.83 13.23 130.48 1.73 5.56 16 19 N -0.52 -16.52 11.30 -304.06 -3.43 -19.96 16 20 H 0.07 2.15 6.91 -2.39 -0.02 2.13 16 21 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 22 H 0.06 2.39 6.33 -2.38 -0.02 2.37 16 23 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 24 H 0.04 1.31 6.21 -2.38 -0.01 1.30 16 25 H 0.07 2.12 6.33 -2.39 -0.02 2.10 16 26 H 0.04 1.91 6.86 -2.39 -0.02 1.89 16 27 H 0.07 1.92 7.06 -2.39 -0.02 1.90 16 28 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 29 H 0.24 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.29 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -73.82 242.80 0.88 -72.95 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.06 Total: 6.12 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.57 Total: -14.18 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -7.39 Total: -106.96 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.04 Total: -4.69 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -73.82 0.88 -72.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308170145.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.903 kcal (2) G-P(sol) polarization free energy of solvation -73.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds