Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 H 1.08995 * 109.46795 * 54.99762 * 3 2 1 5 5 O 1.42897 * 109.46912 * 294.99888 * 3 2 1 6 6 C 1.53002 * 109.46983 * 174.99836 * 3 2 1 7 7 N 1.46497 * 109.46782 * 184.99624 * 6 3 2 8 8 C 1.36411 * 126.56011 * 265.02431 * 7 6 3 9 9 C 1.36221 * 107.19838 * 179.97438 * 8 7 6 10 10 N 1.32759 * 108.61567 * 0.02562 * 9 8 7 11 11 C 1.32988 * 109.22586 * 359.75802 * 10 9 8 12 12 C 1.39997 * 125.96624 * 180.22650 * 11 10 9 13 13 H 1.07990 * 120.00330 * 174.40194 * 12 11 10 14 14 C 1.40238 * 119.99762 * 354.40945 * 12 11 10 15 15 N 1.30696 * 119.99861 * 6.04989 * 14 12 11 16 16 Si 1.86803 * 119.99965 * 186.04901 * 14 12 11 17 17 H 1.48496 * 109.46841 * 94.98377 * 16 14 12 18 18 H 1.48496 * 109.47087 * 214.98109 * 16 14 12 19 19 H 1.48497 * 109.46948 * 334.98148 * 16 14 12 20 20 H 1.08993 * 109.47712 * 299.99722 * 1 2 3 21 21 H 1.08999 * 109.47243 * 60.00428 * 1 2 3 22 22 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47366 * 239.99877 * 2 1 3 24 24 H 1.08999 * 109.47243 * 119.99572 * 2 1 3 25 25 H 0.96702 * 114.00055 * 299.99829 * 5 3 2 26 26 H 1.08999 * 109.47030 * 305.00006 * 6 3 2 27 27 H 1.09007 * 109.46853 * 65.00138 * 6 3 2 28 28 H 1.08004 * 126.40257 * 0.02562 * 8 7 6 29 29 H 1.07997 * 125.69275 * 180.02562 * 9 8 7 30 30 H 0.97002 * 119.99349 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4444 0.1258 7 7 4.0431 2.8239 0.2457 8 6 4.4874 3.6210 -0.7682 9 6 4.8327 4.8182 -0.2177 10 7 4.6104 4.7632 1.0900 11 6 4.1254 3.5647 1.4017 12 6 3.7646 3.1317 2.6832 13 1 3.2954 2.1681 2.8154 14 6 4.0124 3.9493 3.7953 15 7 4.4704 5.1617 3.6259 16 14 3.6879 3.3057 5.5186 17 1 4.9453 2.7569 6.0869 18 1 3.1993 4.4144 6.3772 19 1 2.6613 2.2343 5.4617 20 1 -0.3634 0.5137 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0141 1.6542 -2.0139 26 1 3.8570 0.8802 1.0114 27 1 4.0029 0.9837 -0.7597 28 1 4.5524 3.3532 -1.8125 29 1 5.2223 5.6700 -0.7553 30 1 4.6415 5.7273 4.3951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308259851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -4.748070 kcal Electronic energy + Delta-G solvation = -14019.857389 eV Core-core repulsion = 11622.816956 eV Total energy + Delta-G solvation = -2397.040433 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85942 -37.49005 -33.26007 -32.80997 -32.02085 -28.54396 -27.54896 -24.80586 -23.28766 -21.19569 -19.78856 -19.21808 -16.86295 -15.89466 -15.60368 -15.26303 -14.77309 -14.46600 -13.47221 -12.82519 -12.71056 -12.44120 -12.16237 -11.87188 -11.81151 -11.31108 -11.15309 -11.02495 -10.89306 -10.61288 -10.33807 -10.07121 -9.81232 -9.13166 -7.81159 -7.67499 -6.94587 -6.33304 -4.19517 3.07862 3.18325 3.20905 3.73503 4.05182 4.34215 4.72379 4.81002 4.99876 5.18914 5.26241 5.42688 5.64258 5.80080 5.85933 5.91282 6.01293 6.08508 6.32116 6.40101 6.47877 6.66232 7.22348 7.36775 7.70024 7.94605 8.18182 8.29783 8.67612 9.04485 9.41921 10.35001 10.60935 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.011871 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.909519 B = 2358.096021 C = 3226.164363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 C 0.089 3.911 4 H 0.108 0.892 5 O -0.549 6.549 6 C 0.099 3.901 7 N -0.500 5.500 8 C -0.164 4.164 9 C -0.022 4.022 10 N -0.518 5.518 11 C 0.373 3.627 12 C -0.465 4.465 13 H 0.075 0.925 14 C 0.083 3.917 15 N -0.743 5.743 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.265 1.265 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.363 0.637 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -9.704 -4.380 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.191 4.191 3 C 0.029 3.971 4 H 0.126 0.874 5 O -0.353 6.353 6 C -0.027 4.027 7 N -0.189 5.189 8 C -0.294 4.294 9 C -0.174 4.174 10 N -0.239 5.239 11 C 0.130 3.870 12 C -0.505 4.505 13 H 0.093 0.907 14 C -0.141 4.141 15 N -0.368 5.368 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.189 1.189 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.208 0.792 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.303 -8.547 -3.390 10.152 hybrid contribution 0.070 -1.389 -0.301 1.423 sum -4.233 -9.936 -3.691 11.414 Atomic orbital electron populations 1.21677 0.95215 1.00943 1.02553 1.22193 0.97151 0.97367 1.02430 1.22495 0.93969 0.92334 0.88278 0.87424 1.86680 1.76300 1.57246 1.15081 1.21968 0.94277 0.84131 1.02301 1.45279 1.54605 1.10595 1.08457 1.21736 1.19765 0.95432 0.92498 1.22094 1.06049 0.95766 0.93517 1.71263 1.24600 1.17636 1.10370 1.20267 0.95191 0.85379 0.86159 1.18042 1.40414 1.03975 0.88060 0.90715 1.25680 0.93897 0.94232 1.00274 1.70033 1.29742 1.05821 1.31238 0.86346 0.79150 0.79243 0.82093 1.19795 1.20311 1.18915 0.92543 0.92252 0.93178 0.92001 0.90909 0.79191 0.89752 0.91444 0.85117 0.85109 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.81 37.16 0.36 -1.38 16 2 C -0.15 -1.90 5.61 -26.73 -0.15 -2.05 16 3 C 0.09 1.48 3.21 -26.73 -0.09 1.40 16 4 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 5 O -0.55 -9.35 12.82 -35.23 -0.45 -9.80 16 6 C 0.10 1.80 5.47 -4.04 -0.02 1.78 16 7 N -0.50 -12.04 2.76 -115.97 -0.32 -12.35 16 8 C -0.16 -3.92 11.60 -16.24 -0.19 -4.11 16 9 C -0.02 -0.58 11.85 -17.88 -0.21 -0.79 16 10 N -0.52 -15.63 9.43 -12.72 -0.12 -15.75 16 11 C 0.37 10.64 7.43 -155.59 -1.16 9.48 16 12 C -0.47 -12.81 8.99 -38.17 -0.34 -13.16 16 13 H 0.07 1.88 7.39 -52.49 -0.39 1.49 16 14 C 0.08 2.22 5.49 -17.28 -0.09 2.12 16 15 N -0.74 -21.36 11.92 55.56 0.66 -20.70 16 16 Si 0.91 19.45 29.57 -169.99 -5.03 14.42 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.36 4.61 9.05 45.56 0.41 5.02 16 26 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 27 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.13 2.65 8.06 -52.48 -0.42 2.23 16 29 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 30 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 262.46 15.07 3.96 3.96 Total: -1.00 -33.44 262.46 -6.48 -39.92 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.30 Total: 7.02 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.89 Total: -6.71 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.22 Total: -48.81 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.45 Total: -9.80 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.44 -6.48 -39.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308259851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.173 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds