Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 H 1.08995 * 109.46795 * 54.99762 * 3 2 1 5 5 O 1.42897 * 109.46912 * 294.99888 * 3 2 1 6 6 C 1.53002 * 109.46983 * 174.99836 * 3 2 1 7 7 N 1.46497 * 109.46782 * 184.99624 * 6 3 2 8 8 C 1.36411 * 126.56011 * 265.02431 * 7 6 3 9 9 C 1.36221 * 107.19838 * 179.97438 * 8 7 6 10 10 N 1.32759 * 108.61567 * 0.02562 * 9 8 7 11 11 C 1.32988 * 109.22586 * 359.75802 * 10 9 8 12 12 C 1.39997 * 125.96624 * 180.22650 * 11 10 9 13 13 H 1.07990 * 120.00330 * 174.40194 * 12 11 10 14 14 C 1.40238 * 119.99762 * 354.40945 * 12 11 10 15 15 N 1.30696 * 119.99861 * 6.04989 * 14 12 11 16 16 Si 1.86803 * 119.99965 * 186.04901 * 14 12 11 17 17 H 1.48496 * 109.46841 * 94.98377 * 16 14 12 18 18 H 1.48496 * 109.47087 * 214.98109 * 16 14 12 19 19 H 1.48497 * 109.46948 * 334.98148 * 16 14 12 20 20 H 1.08993 * 109.47712 * 299.99722 * 1 2 3 21 21 H 1.08999 * 109.47243 * 60.00428 * 1 2 3 22 22 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47366 * 239.99877 * 2 1 3 24 24 H 1.08999 * 109.47243 * 119.99572 * 2 1 3 25 25 H 0.96702 * 114.00055 * 299.99829 * 5 3 2 26 26 H 1.08999 * 109.47030 * 305.00006 * 6 3 2 27 27 H 1.09007 * 109.46853 * 65.00138 * 6 3 2 28 28 H 1.08004 * 126.40257 * 0.02562 * 8 7 6 29 29 H 1.07997 * 125.69275 * 180.02562 * 9 8 7 30 30 H 0.97002 * 119.99349 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4444 0.1258 7 7 4.0431 2.8239 0.2457 8 6 4.4874 3.6210 -0.7682 9 6 4.8327 4.8182 -0.2177 10 7 4.6104 4.7632 1.0900 11 6 4.1254 3.5647 1.4017 12 6 3.7646 3.1317 2.6832 13 1 3.2954 2.1681 2.8154 14 6 4.0124 3.9493 3.7953 15 7 4.4704 5.1617 3.6259 16 14 3.6879 3.3057 5.5186 17 1 4.9453 2.7569 6.0869 18 1 3.1993 4.4144 6.3772 19 1 2.6613 2.2343 5.4617 20 1 -0.3634 0.5137 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0141 1.6542 -2.0139 26 1 3.8570 0.8802 1.0114 27 1 4.0029 0.9837 -0.7597 28 1 4.5524 3.3532 -1.8125 29 1 5.2223 5.6700 -0.7553 30 1 4.6415 5.7273 4.3951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308259851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -28.686284 kcal Electronic energy + Delta-G solvation = -14020.895428 eV Core-core repulsion = 11622.816956 eV Total energy + Delta-G solvation = -2398.078472 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.77439 -38.83345 -35.25317 -34.23901 -33.43793 -30.56605 -29.05691 -26.79255 -24.64155 -22.39044 -21.78142 -21.09851 -18.67421 -17.60282 -17.01100 -16.82315 -16.25060 -16.02957 -14.86611 -14.50630 -14.47336 -14.16286 -13.76493 -13.25515 -13.02367 -12.88334 -12.84048 -12.58359 -12.35605 -11.85560 -11.84547 -11.82902 -11.18587 -11.03360 -9.73781 -9.71299 -8.97421 -8.31109 -6.25404 1.37178 1.42849 1.58110 1.85663 2.26889 2.65912 2.79582 3.49413 3.60926 3.81594 4.01496 4.09134 4.26994 4.55339 4.60116 4.63595 4.75772 4.82746 4.94200 5.07930 5.20953 5.29804 5.39810 5.40166 5.74455 6.20544 6.30767 6.72376 6.88794 7.04058 7.44500 8.34180 8.66339 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.011871 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.909519 B = 2358.096021 C = 3226.164363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.099 3.901 4 H 0.064 0.936 5 O -0.570 6.570 6 C 0.089 3.911 7 N -0.498 5.498 8 C -0.135 4.135 9 C -0.071 4.071 10 N -0.568 5.568 11 C 0.336 3.664 12 C -0.491 4.491 13 H 0.088 0.912 14 C 0.029 3.971 15 N -0.797 5.797 16 Si 0.991 3.009 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.250 1.250 20 H 0.040 0.960 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.383 0.617 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.175 0.825 29 H 0.147 0.853 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -12.314 -4.941 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.039 3.961 4 H 0.083 0.917 5 O -0.377 6.377 6 C -0.034 4.034 7 N -0.186 5.186 8 C -0.266 4.266 9 C -0.222 4.222 10 N -0.290 5.290 11 C 0.091 3.909 12 C -0.531 4.531 13 H 0.106 0.894 14 C -0.190 4.190 15 N -0.423 5.423 16 Si 0.811 3.189 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.173 1.173 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.232 0.768 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.192 0.808 29 H 0.164 0.836 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.879 -11.201 -3.996 12.854 hybrid contribution 0.248 -0.598 -0.325 0.724 sum -4.631 -11.798 -4.321 13.391 Atomic orbital electron populations 1.21677 0.94917 1.02204 1.01560 1.22105 0.97282 0.94278 1.04273 1.22250 0.92394 0.94406 0.87051 0.91744 1.86636 1.76665 1.58340 1.16040 1.22406 0.95598 0.81167 1.04215 1.45558 1.53377 1.12447 1.07227 1.22365 1.15972 0.94201 0.94075 1.22553 1.08594 0.97992 0.93028 1.71124 1.25885 1.19503 1.12513 1.20584 0.96529 0.86011 0.87811 1.18480 1.41184 1.04847 0.88551 0.89369 1.26798 0.93001 0.94126 1.05040 1.70190 1.31674 1.07615 1.32830 0.85079 0.79451 0.78782 0.75555 1.18966 1.19931 1.17328 0.94100 0.92781 0.90737 0.89048 0.90084 0.76798 0.89522 0.87614 0.80769 0.83598 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.81 71.98 0.71 -2.41 16 2 C -0.14 -3.04 5.61 30.60 0.17 -2.87 16 3 C 0.10 3.11 3.21 30.60 0.10 3.21 16 4 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 5 O -0.57 -18.11 12.82 -148.98 -1.91 -20.02 16 6 C 0.09 3.05 5.47 86.38 0.47 3.52 16 7 N -0.50 -23.56 2.76 -520.81 -1.43 -25.00 16 8 C -0.13 -6.22 11.60 83.51 0.97 -5.26 16 9 C -0.07 -3.81 11.85 84.08 1.00 -2.81 16 10 N -0.57 -35.44 9.43 -194.16 -1.83 -37.27 16 11 C 0.34 19.55 7.43 133.59 0.99 20.54 16 12 C -0.49 -27.56 8.99 23.18 0.21 -27.35 16 13 H 0.09 4.47 7.39 -2.92 -0.02 4.45 16 14 C 0.03 1.57 5.49 85.35 0.47 2.04 16 15 N -0.80 -47.50 11.92 21.88 0.26 -47.24 16 16 Si 0.99 40.30 29.57 68.60 2.03 42.33 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 20 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.05 1.20 7.82 -2.39 -0.02 1.18 16 22 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.38 8.33 9.05 -74.06 -0.67 7.66 16 26 H 0.09 2.92 7.69 -2.39 -0.02 2.90 16 27 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 28 H 0.18 6.37 8.06 -2.91 -0.02 6.35 16 29 H 0.15 6.97 8.06 -2.91 -0.02 6.95 16 30 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 Total: -1.00 -75.55 262.46 2.66 -72.90 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.46 Total: 25.69 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.08 Total: -11.39 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.00 Total: -109.51 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.91 Total: -20.02 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -75.55 2.66 -72.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308259851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.209 kcal (2) G-P(sol) polarization free energy of solvation -75.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds