Wall clock time and date at job start Mon Mar 30 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46753 * 2 1 4 4 N 1.46506 * 109.46425 * 184.81842 * 3 2 1 5 5 C 1.36941 * 119.99807 * 94.58650 * 4 3 2 6 6 H 1.08001 * 119.99929 * 37.87116 * 5 4 3 7 7 C 1.38807 * 119.99619 * 217.60385 * 5 4 3 8 8 N 1.31622 * 119.99575 * 211.96392 * 7 5 4 9 9 Si 1.86800 * 120.00311 * 31.95985 * 7 5 4 10 10 H 1.48502 * 109.46965 * 86.00464 * 9 7 5 11 11 H 1.48501 * 109.47046 * 205.99703 * 9 7 5 12 12 H 1.48499 * 109.47197 * 326.00426 * 9 7 5 13 13 C 1.46499 * 120.00355 * 274.57739 * 4 3 2 14 14 C 1.50704 * 109.46910 * 275.35535 * 13 4 3 15 15 C 1.41378 * 126.80175 * 94.71186 * 14 13 4 16 16 C 1.35446 * 103.98608 * 179.88466 * 15 14 13 17 17 O 1.34040 * 106.44525 * 0.36416 * 16 15 14 18 18 N 1.20921 * 111.56913 * 359.75310 * 17 16 15 19 19 H 1.08994 * 109.47119 * 304.87016 * 1 2 3 20 20 H 1.09000 * 109.47268 * 64.87787 * 1 2 3 21 21 H 1.08999 * 109.46688 * 184.87337 * 1 2 3 22 22 H 1.08998 * 109.47004 * 239.99774 * 2 1 3 23 23 H 1.09001 * 109.46964 * 119.99993 * 2 1 3 24 24 H 1.08999 * 109.46869 * 64.82561 * 3 2 1 25 25 H 1.08992 * 109.47333 * 304.81622 * 3 2 1 26 26 H 0.97004 * 119.99785 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.46401 * 35.35195 * 13 4 3 28 28 H 1.08994 * 109.47428 * 155.35274 * 13 4 3 29 29 H 1.08001 * 128.00780 * 0.02562 * 15 14 13 30 30 H 1.08005 * 126.78185 * 180.09983 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5004 1.4441 -0.1160 5 6 4.0894 1.5727 -1.3456 6 1 3.6595 2.2334 -2.0839 7 6 5.2422 0.8581 -1.6410 8 7 6.1413 1.3674 -2.4562 9 14 5.5175 -0.8262 -0.8816 10 1 4.8581 -1.8604 -1.7188 11 1 6.9745 -1.1039 -0.8082 12 1 4.9388 -0.8533 0.4857 13 6 4.3307 1.3082 1.0833 14 6 4.5168 2.6608 1.7213 15 6 3.7469 3.2161 2.7690 16 6 4.3084 4.4306 2.9796 17 8 5.3147 4.5410 2.1010 18 7 5.4146 3.5516 1.4131 19 1 -0.3633 0.5875 0.8431 20 1 -0.3634 0.4363 -0.9304 21 1 -0.3633 -1.0240 0.0873 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.7489 1.9307 0.9301 25 1 1.6079 1.9806 -0.8436 26 1 6.9471 0.8682 -2.6624 27 1 3.8416 0.6374 1.7897 28 1 5.3029 0.8996 0.8078 29 1 2.9072 2.7734 3.2841 30 1 4.0026 5.1669 3.7083 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308428724.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:54 Heat of formation + Delta-G solvation = 59.176829 kcal Electronic energy + Delta-G solvation = -14110.618414 eV Core-core repulsion = 11716.349972 eV Total energy + Delta-G solvation = -2394.268442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.70156 -38.39022 -35.07786 -34.52987 -32.90345 -32.30636 -28.55853 -27.53943 -24.09814 -23.75136 -22.43992 -21.31511 -19.21587 -18.42801 -18.14580 -17.17188 -16.28118 -15.73450 -15.64883 -14.91566 -14.57781 -14.26836 -14.07473 -13.78322 -13.15516 -12.84306 -12.49814 -12.44350 -12.25202 -12.13608 -11.85975 -11.50201 -11.34918 -10.83726 -10.62688 -10.38698 -8.87059 -8.28859 -5.57588 0.87181 1.31043 1.37856 1.46309 1.51932 2.41177 2.73188 2.96907 3.46495 3.57217 3.90736 4.24746 4.38045 4.45470 4.52289 4.63824 4.77375 4.79054 4.86878 4.94582 5.02424 5.19529 5.27770 5.35004 5.43084 5.59446 5.88819 6.14549 6.94291 7.59345 7.70537 8.02522 8.91573 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.014832 C = 0.010148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.621104 B = 1887.397182 C = 2758.608507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.600 5.600 5 C -0.269 4.269 6 H 0.027 0.973 7 C -0.006 4.006 8 N -0.931 5.931 9 Si 0.918 3.082 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.230 1.230 13 C 0.212 3.788 14 C -0.018 4.018 15 C -0.234 4.234 16 C -0.060 4.060 17 O 0.082 5.918 18 N -0.403 5.403 19 H 0.068 0.932 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.262 0.738 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.198 0.802 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 0.760 14.225 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.323 5.323 5 C -0.398 4.398 6 H 0.045 0.955 7 C -0.205 4.205 8 N -0.573 5.573 9 Si 0.743 3.257 10 H -0.213 1.213 11 H -0.230 1.230 12 H -0.153 1.153 13 C 0.085 3.915 14 C -0.178 4.178 15 C -0.256 4.256 16 C -0.141 4.141 17 O 0.016 5.984 18 N -0.108 5.108 19 H 0.087 0.913 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.215 0.785 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -8.364 0.797 13.225 15.668 hybrid contribution 0.038 -0.861 -0.071 0.865 sum -8.326 -0.064 13.154 15.568 Atomic orbital electron populations 1.21648 0.93915 1.02065 1.01996 1.22028 0.96795 0.98465 1.00800 1.21110 0.81550 0.95308 0.99682 1.44118 1.01828 1.85245 1.01067 1.18422 1.08943 1.20180 0.92300 0.95486 1.26052 0.95882 1.01125 0.97436 1.70173 1.08408 1.37699 1.41020 0.86343 0.75906 0.82441 0.80989 1.21294 1.22972 1.15339 1.19779 0.95446 0.88231 0.88046 1.25169 0.94310 1.00865 0.97473 1.23078 1.05064 0.96627 1.00829 1.26927 0.90135 1.00374 0.96706 1.84802 1.44133 1.32951 1.36476 1.73985 1.24738 0.96701 1.15408 0.91322 0.93270 0.92032 0.94612 0.92255 0.91716 0.94371 0.92882 0.88975 0.93938 0.78458 0.71890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.14 -4.65 6.26 30.60 0.19 -4.46 16 3 C 0.15 5.62 5.69 86.38 0.49 6.11 16 4 N -0.60 -28.60 2.03 -706.33 -1.43 -30.03 16 5 C -0.27 -15.85 9.78 84.03 0.82 -15.03 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 7 C -0.01 -0.39 5.04 84.86 0.43 0.04 16 8 N -0.93 -60.75 13.97 21.65 0.30 -60.44 16 9 Si 0.92 45.90 26.49 68.60 1.82 47.72 16 10 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 12 H -0.23 -10.20 5.49 99.48 0.55 -9.66 16 13 C 0.21 9.23 4.44 85.63 0.38 9.61 16 14 C -0.02 -0.72 6.90 43.58 0.30 -0.41 16 15 C -0.23 -6.59 11.12 22.40 0.25 -6.34 16 16 C -0.06 -1.47 12.30 67.17 0.83 -0.64 16 17 O 0.08 2.96 11.20 71.64 0.80 3.76 16 18 N -0.40 -18.37 12.07 -49.57 -0.60 -18.97 16 19 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 25 H 0.04 1.54 8.00 -2.39 -0.02 1.52 16 26 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 27 H 0.09 3.31 8.09 -2.38 -0.02 3.29 16 28 H 0.04 2.10 4.45 -2.39 -0.01 2.09 16 29 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.27 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -75.84 258.75 6.24 -69.59 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 0.95 Total: 2.18 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 4.40 Total: -13.81 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -1.73 Total: -109.45 kcal Atomic # 8 Polarization: 2.96 SS G_CDS: 0.80 Total: 3.76 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.82 Total: 47.72 kcal Total: -75.84 6.24 -69.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308428724.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.768 kcal (2) G-P(sol) polarization free energy of solvation -75.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds