Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36235 * 116.99793 * 2 1 4 4 C 1.40107 * 126.05237 * 359.69538 * 3 2 1 5 5 N 1.30870 * 108.35760 * 179.81647 * 4 3 2 6 6 N 1.40078 * 108.31952 * 0.43613 * 5 4 3 7 7 C 1.46504 * 126.07638 * 179.68089 * 6 5 4 8 8 C 1.52998 * 109.47374 * 305.04442 * 7 6 5 9 9 C 1.52995 * 109.47223 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47166 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99872 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00100 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99712 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47409 * 59.99942 * 14 12 10 16 16 H 1.48501 * 109.46768 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47240 * 299.99375 * 14 12 10 18 18 C 1.35587 * 126.04594 * 180.02562 * 3 2 1 19 19 H 1.09004 * 109.47198 * 299.99572 * 1 2 3 20 20 H 1.08999 * 109.47144 * 59.99879 * 1 2 3 21 21 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 22 22 H 1.08007 * 125.82183 * 359.97438 * 4 3 2 23 23 H 1.09002 * 109.46729 * 65.04895 * 7 6 5 24 24 H 1.09001 * 109.46735 * 185.04414 * 7 6 5 25 25 H 1.08999 * 109.46870 * 300.00158 * 8 7 6 26 26 H 1.08999 * 109.46939 * 59.99811 * 8 7 6 27 27 H 1.08994 * 109.47167 * 300.00290 * 9 8 7 28 28 H 1.08999 * 109.47113 * 60.00168 * 9 8 7 29 29 H 0.97005 * 119.99753 * 180.02562 * 13 12 10 30 30 H 1.07993 * 126.21375 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4125 2.4628 -0.0060 5 7 2.3329 3.3931 0.0001 6 7 3.5879 2.7709 0.0001 7 6 4.8868 3.4486 -0.0007 8 6 4.9555 4.4181 -1.1823 9 6 6.3117 5.1263 -1.1827 10 6 6.3792 6.0817 -2.3461 11 1 5.5387 6.1749 -3.0178 12 6 7.5141 6.8369 -2.5530 13 7 8.5374 6.7238 -1.7348 14 14 7.5974 8.0218 -3.9948 15 1 6.5136 9.0293 -3.8708 16 1 8.9138 8.7090 -3.9952 17 1 7.4309 7.2693 -5.2642 18 6 3.3865 1.4271 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.3454 2.6294 -0.0119 23 1 5.0086 4.0015 0.9307 24 1 5.6824 2.7089 -0.0909 25 1 4.8337 3.8651 -2.1136 26 1 4.1599 5.1577 -1.0921 27 1 6.4331 5.6793 -0.2513 28 1 7.1076 4.3870 -1.2726 29 1 9.3357 7.2555 -1.8802 30 1 4.1536 0.6670 -0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379357501.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = 27.809389 kcal Electronic energy + Delta-G solvation = -13106.076504 eV Core-core repulsion = 10710.447868 eV Total energy + Delta-G solvation = -2395.628636 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05934 -37.93117 -34.84073 -32.69821 -30.71071 -29.57448 -26.99151 -26.35783 -23.61716 -21.00290 -20.95097 -19.94008 -17.79245 -16.29046 -15.79020 -15.48246 -15.10793 -14.79165 -14.39369 -14.00085 -13.66776 -12.63196 -12.39860 -12.05646 -11.88548 -11.63650 -11.18845 -10.89631 -10.85001 -10.62173 -10.39257 -9.80568 -9.59527 -9.28607 -9.06904 -8.38641 -7.71469 -6.04044 -4.06476 2.05171 2.65182 2.91682 3.32718 3.36695 3.39903 3.54579 4.43703 4.85745 4.92789 5.13519 5.15356 5.29540 5.32519 5.43005 5.60614 5.68808 5.86428 5.89445 6.33199 6.55318 6.61499 6.97523 7.21862 7.51415 7.58675 7.69965 7.85501 7.94294 8.36715 8.99339 9.57903 11.07306 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.076616 B = 0.005005 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.370499 B = 5592.538242 C = 5760.028390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.310 6.310 3 C -0.046 4.046 4 C -0.019 4.019 5 N -0.263 5.263 6 N -0.349 5.349 7 C 0.133 3.867 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.022 3.978 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.093 0.907 22 H 0.179 0.821 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.262 0.738 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -11.456 4.189 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.223 6.223 3 C -0.101 4.101 4 C -0.204 4.204 5 N -0.088 5.088 6 N -0.136 5.136 7 C 0.013 3.987 8 C -0.159 4.159 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.123 4.123 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.111 0.889 22 H 0.196 0.804 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.580 -10.295 4.235 16.063 hybrid contribution -0.295 -0.104 -0.791 0.851 sum -11.875 -10.400 3.444 16.157 Atomic orbital electron populations 1.22876 0.79061 1.03123 1.00853 1.85956 1.20355 1.24368 1.91637 1.18626 0.91581 0.85252 1.14601 1.23915 0.99852 0.90126 1.06498 1.77306 0.88285 1.21681 1.21488 1.48871 1.06254 1.03242 1.55255 1.22178 0.77547 0.96723 1.02213 1.21973 1.02229 0.97073 0.94581 1.19061 0.89593 0.95061 0.97652 1.21150 1.00643 1.22568 1.11604 0.92654 1.25009 0.95683 0.97133 0.96526 1.69945 1.05109 1.41140 1.37312 0.86624 0.77179 0.81172 0.82853 1.20179 1.21236 1.20215 1.21602 0.95681 0.87101 1.07918 0.93353 0.93295 0.88863 0.80415 0.89797 0.88718 0.92782 0.91727 0.96195 0.96332 0.92866 0.80473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.15 101.05 1.03 1.34 16 2 O -0.31 -4.06 10.59 -20.49 -0.22 -4.28 16 3 C -0.05 -0.68 6.96 -39.83 -0.28 -0.95 16 4 C -0.02 -0.27 11.07 -17.26 -0.19 -0.46 16 5 N -0.26 -4.63 12.41 30.68 0.38 -4.25 16 6 N -0.35 -5.85 3.71 -61.05 -0.23 -6.08 16 7 C 0.13 2.23 6.52 -4.04 -0.03 2.20 16 8 C -0.12 -2.49 5.34 -26.73 -0.14 -2.63 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.02 0.33 11.52 -16.71 -0.19 0.14 16 19 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 20 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 21 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.18 1.97 7.69 -52.48 -0.40 1.57 16 23 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 24 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 266.88 15.07 4.02 4.02 Total: -1.00 -32.03 266.88 -4.84 -36.87 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.16 Total: -3.65 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.35 Total: -13.42 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.89 Total: -36.23 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.22 Total: -4.28 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.03 -4.84 -36.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357501.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.682 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds