Wall clock time and date at job start Mon Mar 30 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46628 * 2 1 4 4 C 1.52998 * 109.47103 * 120.00099 * 2 1 3 5 5 O 1.42905 * 109.46705 * 294.99956 * 4 2 1 6 6 C 1.52994 * 109.47009 * 239.99976 * 2 1 3 7 7 N 1.46505 * 109.47242 * 65.00034 * 6 2 1 8 8 C 1.36418 * 126.55434 * 265.02031 * 7 6 2 9 9 C 1.36216 * 107.18974 * 179.97438 * 8 7 6 10 10 N 1.32754 * 108.62251 * 0.02562 * 9 8 7 11 11 C 1.32986 * 109.22621 * 359.76259 * 10 9 8 12 12 C 1.39994 * 125.96383 * 180.23402 * 11 10 9 13 13 H 1.08004 * 119.99748 * 174.39732 * 12 11 10 14 14 C 1.40231 * 120.00119 * 354.39637 * 12 11 10 15 15 N 1.30686 * 120.00301 * 6.05518 * 14 12 11 16 16 Si 1.86801 * 120.00017 * 186.05717 * 14 12 11 17 17 H 1.48496 * 109.47112 * 94.98143 * 16 14 12 18 18 H 1.48503 * 109.47117 * 214.98075 * 16 14 12 19 19 H 1.48502 * 109.46970 * 334.97951 * 16 14 12 20 20 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47318 * 300.00041 * 1 2 3 22 22 H 1.09003 * 109.47059 * 60.00023 * 1 2 3 23 23 H 1.09003 * 109.47270 * 54.99447 * 4 2 1 24 24 H 1.08996 * 109.47438 * 175.00057 * 4 2 1 25 25 H 0.96701 * 113.99828 * 179.97438 * 5 4 2 26 26 H 1.09000 * 109.46969 * 185.00257 * 6 2 1 27 27 H 1.09004 * 109.47449 * 305.00082 * 6 2 1 28 28 H 1.07997 * 126.40570 * 0.02562 * 8 7 6 29 29 H 1.07997 * 125.68918 * 180.02562 * 9 8 7 30 30 H 0.96996 * 120.00342 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 0.0168 2.4130 6 6 2.0399 -0.7212 -1.2492 7 7 1.6524 0.0354 -2.4424 8 6 0.5471 -0.1744 -3.2140 9 6 0.5738 0.7491 -4.2150 10 7 1.6569 1.5024 -4.0680 11 6 2.3308 1.0961 -2.9959 12 6 3.5239 1.6496 -2.5162 13 1 3.9434 1.3025 -1.5835 14 6 4.1741 2.6546 -3.2467 15 7 3.6087 3.1579 -4.3120 16 14 5.8486 3.2739 -2.6970 17 1 6.9122 2.5436 -3.4322 18 1 5.9574 4.7270 -2.9834 19 1 6.0073 3.0435 -1.2386 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 1.9524 -0.3832 3.2441 26 1 3.1263 -0.7995 -1.2055 27 1 1.6053 -1.7198 -1.2952 28 1 -0.2083 -0.9306 -3.0596 29 1 -0.1633 0.8513 -4.9977 30 1 4.0584 3.8533 -4.8170 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379382106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:16 Heat of formation + Delta-G solvation = -3.151947 kcal Electronic energy + Delta-G solvation = -13996.123495 eV Core-core repulsion = 11599.152275 eV Total energy + Delta-G solvation = -2396.971220 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.89959 -37.31681 -34.49468 -33.24756 -30.65423 -28.58227 -26.44831 -25.18382 -24.46906 -20.30985 -19.63665 -19.17861 -17.38464 -16.47194 -15.51990 -15.23384 -14.55355 -14.12086 -13.61215 -13.20575 -12.65928 -12.45177 -12.08117 -11.96759 -11.73781 -11.17715 -11.13137 -10.75831 -10.65321 -10.49462 -10.26230 -10.05879 -9.85158 -9.14415 -7.88726 -7.69588 -6.97277 -6.34298 -4.20730 3.07873 3.18976 3.21773 3.68910 4.04060 4.21737 4.66524 4.79839 5.10043 5.31015 5.40332 5.56690 5.66051 5.77206 5.87103 6.05073 6.21257 6.36687 6.39184 6.63435 6.68780 6.70654 7.21476 7.35769 7.68104 7.71068 8.16219 8.29974 8.65779 9.03654 9.40364 10.32773 10.59713 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.011786 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.690308 B = 2375.205569 C = 3258.657421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.089 0.911 4 C 0.085 3.915 5 O -0.570 6.570 6 C 0.137 3.863 7 N -0.502 5.502 8 C -0.174 4.174 9 C -0.018 4.018 10 N -0.519 5.519 11 C 0.376 3.624 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.083 3.917 15 N -0.743 5.743 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.265 1.265 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.373 0.627 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -6.719 9.075 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.107 0.893 4 C 0.006 3.994 5 O -0.375 6.375 6 C 0.012 3.988 7 N -0.193 5.193 8 C -0.304 4.304 9 C -0.171 4.171 10 N -0.240 5.240 11 C 0.133 3.867 12 C -0.502 4.502 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.368 5.368 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.189 1.189 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.219 0.781 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.637 -5.624 7.987 9.789 hybrid contribution 0.654 -0.914 1.170 1.623 sum 0.017 -6.538 9.158 11.252 Atomic orbital electron populations 1.21703 0.94606 1.00854 1.02263 1.21537 0.97211 1.01918 0.92267 0.89297 1.22160 0.97941 0.93721 0.85544 1.86525 1.81474 1.53333 1.16152 1.21130 1.00149 0.93728 0.83797 1.45328 1.21795 1.29355 1.22778 1.21766 0.97176 1.09794 1.01663 1.22119 0.99195 0.96776 0.99006 1.71285 1.06558 1.27805 1.18351 1.20267 0.93202 0.84309 0.88935 1.18079 1.04551 1.19827 1.07773 0.90595 1.25681 0.98591 0.95461 0.94341 1.70022 1.35378 1.19001 1.12396 0.86342 0.82338 0.78375 0.79774 1.19786 1.20306 1.18880 0.93787 0.92696 0.91691 0.93985 0.93551 0.78076 0.90490 0.91524 0.85009 0.85084 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.84 37.16 0.33 -1.99 16 2 C -0.11 -1.91 2.83 -90.62 -0.26 -2.17 16 3 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 4 C 0.08 1.14 6.43 37.16 0.24 1.38 16 5 O -0.57 -7.73 13.19 -35.23 -0.46 -8.20 16 6 C 0.14 2.56 5.23 -4.04 -0.02 2.53 16 7 N -0.50 -11.96 2.53 -115.97 -0.29 -12.25 16 8 C -0.17 -4.06 10.28 -16.24 -0.17 -4.23 16 9 C -0.02 -0.47 11.85 -17.88 -0.21 -0.68 16 10 N -0.52 -15.43 9.43 -12.73 -0.12 -15.55 16 11 C 0.38 10.59 7.43 -155.60 -1.16 9.44 16 12 C -0.46 -12.75 8.99 -38.18 -0.34 -13.09 16 13 H 0.08 1.94 7.39 -52.48 -0.39 1.55 16 14 C 0.08 2.22 5.49 -17.29 -0.09 2.13 16 15 N -0.74 -21.24 11.92 55.56 0.66 -20.58 16 16 Si 0.91 19.54 29.57 -169.99 -5.03 14.51 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 19 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.90 7.82 -51.93 -0.41 0.50 16 22 H 0.06 1.26 6.75 -51.93 -0.35 0.91 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.37 3.04 9.12 45.56 0.42 3.46 16 26 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 29 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 30 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 259.21 15.07 3.91 3.91 Total: -1.00 -33.15 259.21 -6.24 -39.39 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.22 Total: 5.44 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.68 Total: -6.68 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.25 Total: -48.38 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.46 Total: -8.20 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.15 -6.24 -39.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379382106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.242 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds