Wall clock time and date at job start Mon Mar 30 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46628 * 2 1 4 4 C 1.52998 * 109.47103 * 120.00099 * 2 1 3 5 5 O 1.42905 * 109.46705 * 294.99956 * 4 2 1 6 6 C 1.52994 * 109.47009 * 239.99976 * 2 1 3 7 7 N 1.46505 * 109.47242 * 65.00034 * 6 2 1 8 8 C 1.36418 * 126.55434 * 265.02031 * 7 6 2 9 9 C 1.36216 * 107.18974 * 179.97438 * 8 7 6 10 10 N 1.32754 * 108.62251 * 0.02562 * 9 8 7 11 11 C 1.32986 * 109.22621 * 359.76259 * 10 9 8 12 12 C 1.39994 * 125.96383 * 180.23402 * 11 10 9 13 13 H 1.08004 * 119.99748 * 174.39732 * 12 11 10 14 14 C 1.40231 * 120.00119 * 354.39637 * 12 11 10 15 15 N 1.30686 * 120.00301 * 6.05518 * 14 12 11 16 16 Si 1.86801 * 120.00017 * 186.05717 * 14 12 11 17 17 H 1.48496 * 109.47112 * 94.98143 * 16 14 12 18 18 H 1.48503 * 109.47117 * 214.98075 * 16 14 12 19 19 H 1.48502 * 109.46970 * 334.97951 * 16 14 12 20 20 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47318 * 300.00041 * 1 2 3 22 22 H 1.09003 * 109.47059 * 60.00023 * 1 2 3 23 23 H 1.09003 * 109.47270 * 54.99447 * 4 2 1 24 24 H 1.08996 * 109.47438 * 175.00057 * 4 2 1 25 25 H 0.96701 * 113.99828 * 179.97438 * 5 4 2 26 26 H 1.09000 * 109.46969 * 185.00257 * 6 2 1 27 27 H 1.09004 * 109.47449 * 305.00082 * 6 2 1 28 28 H 1.07997 * 126.40570 * 0.02562 * 8 7 6 29 29 H 1.07997 * 125.68918 * 180.02562 * 9 8 7 30 30 H 0.96996 * 120.00342 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6619 0.0168 2.4130 6 6 2.0399 -0.7212 -1.2492 7 7 1.6524 0.0354 -2.4424 8 6 0.5471 -0.1744 -3.2140 9 6 0.5738 0.7491 -4.2150 10 7 1.6569 1.5024 -4.0680 11 6 2.3308 1.0961 -2.9959 12 6 3.5239 1.6496 -2.5162 13 1 3.9434 1.3025 -1.5835 14 6 4.1741 2.6546 -3.2467 15 7 3.6087 3.1579 -4.3120 16 14 5.8486 3.2739 -2.6970 17 1 6.9122 2.5436 -3.4322 18 1 5.9574 4.7270 -2.9834 19 1 6.0073 3.0435 -1.2386 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 1.9524 -0.3832 3.2441 26 1 3.1263 -0.7995 -1.2055 27 1 1.6053 -1.7198 -1.2952 28 1 -0.2083 -0.9306 -3.0596 29 1 -0.1633 0.8513 -4.9977 30 1 4.0584 3.8533 -4.8170 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379382106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:16 Heat of formation + Delta-G solvation = -27.045727 kcal Electronic energy + Delta-G solvation = -13997.159607 eV Core-core repulsion = 11599.152275 eV Total energy + Delta-G solvation = -2398.007332 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.81153 -38.49078 -35.88903 -35.22947 -32.36421 -30.58947 -27.85080 -26.89286 -26.12737 -22.00297 -21.40588 -20.93971 -18.75282 -18.10025 -17.35858 -16.61571 -16.16730 -15.71049 -14.96407 -14.72903 -14.44145 -14.22163 -13.66180 -13.55441 -13.23801 -12.91606 -12.85142 -12.38536 -12.22364 -12.04423 -11.83361 -11.64166 -11.08550 -10.85844 -9.83168 -9.73273 -8.97957 -8.31807 -6.25851 1.36177 1.42427 1.57398 1.83978 2.26559 2.63129 2.78953 3.41889 3.69179 3.80358 4.03052 4.23322 4.33856 4.49166 4.58319 4.60076 4.71972 4.75858 4.88507 5.01981 5.19663 5.30556 5.32732 5.40946 5.74909 6.21090 6.31157 6.72172 6.97061 7.03916 7.43738 8.33835 8.65398 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.011786 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.690308 B = 2375.205569 C = 3258.657421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 H 0.043 0.957 4 C 0.093 3.907 5 O -0.592 6.592 6 C 0.130 3.870 7 N -0.500 5.500 8 C -0.140 4.140 9 C -0.065 4.065 10 N -0.568 5.568 11 C 0.340 3.660 12 C -0.490 4.490 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.795 5.795 16 Si 0.990 3.010 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.253 1.253 20 H 0.072 0.928 21 H 0.054 0.946 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.398 0.602 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.148 0.852 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -8.565 11.019 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 H 0.061 0.939 4 C 0.015 3.985 5 O -0.401 6.401 6 C 0.007 3.993 7 N -0.188 5.188 8 C -0.271 4.271 9 C -0.216 4.216 10 N -0.290 5.290 11 C 0.095 3.905 12 C -0.529 4.529 13 H 0.103 0.897 14 C -0.188 4.188 15 N -0.421 5.421 16 Si 0.810 3.190 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.177 1.177 20 H 0.091 0.909 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.248 0.752 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.192 0.808 29 H 0.165 0.835 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.213 -7.511 9.976 12.490 hybrid contribution 0.369 -0.446 0.618 0.847 sum 0.156 -7.958 10.594 13.251 Atomic orbital electron populations 1.21624 0.94208 1.02175 1.00662 1.21422 0.97463 0.99759 0.93967 0.93852 1.22029 0.98599 0.94117 0.83801 1.86457 1.81853 1.54346 1.17412 1.21489 1.00766 0.94791 0.82269 1.45586 1.21056 1.28416 1.23791 1.22360 0.96670 1.08566 0.99537 1.22570 0.99573 0.98213 1.01267 1.71145 1.08191 1.29715 1.19946 1.20536 0.94155 0.86133 0.89710 1.18471 1.05135 1.20810 1.08527 0.89650 1.26757 1.02836 0.95181 0.94053 1.70169 1.37634 1.20122 1.14184 0.85100 0.76487 0.77683 0.79724 1.18863 1.19828 1.17671 0.90862 0.92660 0.94918 0.90800 0.92523 0.75212 0.90321 0.87822 0.80784 0.83461 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 8.84 71.98 0.64 -3.46 16 2 C -0.11 -3.51 2.83 -10.80 -0.03 -3.54 16 3 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.09 2.18 6.43 71.98 0.46 2.65 16 5 O -0.59 -14.33 13.19 -148.98 -1.97 -16.29 16 6 C 0.13 4.54 5.23 86.38 0.45 5.00 16 7 N -0.50 -23.46 2.53 -520.83 -1.32 -24.78 16 8 C -0.14 -6.34 10.28 83.51 0.86 -5.48 16 9 C -0.07 -3.43 11.85 84.08 1.00 -2.43 16 10 N -0.57 -34.91 9.43 -194.18 -1.83 -36.74 16 11 C 0.34 19.61 7.43 133.59 0.99 20.61 16 12 C -0.49 -27.62 8.99 23.18 0.21 -27.41 16 13 H 0.09 4.42 7.39 -2.91 -0.02 4.40 16 14 C 0.03 1.66 5.49 85.35 0.47 2.13 16 15 N -0.79 -47.16 11.92 21.88 0.26 -46.90 16 16 Si 0.99 40.63 29.57 68.60 2.03 42.65 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.05 1.73 7.82 -2.39 -0.02 1.71 16 22 H 0.03 1.22 6.75 -2.39 -0.02 1.20 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.40 5.11 9.12 -74.06 -0.68 4.44 16 26 H 0.08 2.73 7.69 -2.39 -0.02 2.71 16 27 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 28 H 0.18 6.27 8.06 -2.91 -0.02 6.24 16 29 H 0.15 6.86 8.06 -2.91 -0.02 6.83 16 30 H 0.27 14.82 8.29 -92.71 -0.77 14.05 16 Total: -1.00 -75.00 259.21 2.68 -72.33 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.46 Total: 21.68 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.04 Total: -11.96 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -2.89 Total: -108.42 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.97 Total: -16.29 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -75.00 2.68 -72.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379382106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.283 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds