Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 N 1.46497 * 109.47166 * 119.99754 * 2 1 3 5 5 C 1.36935 * 120.00493 * 299.70696 * 4 2 1 6 6 H 1.07999 * 119.99853 * 35.99803 * 5 4 2 7 7 C 1.38806 * 120.00041 * 216.00111 * 5 4 2 8 8 N 1.31620 * 120.00086 * 214.40049 * 7 5 4 9 9 Si 1.86804 * 120.00059 * 34.40364 * 7 5 4 10 10 H 1.48499 * 109.47223 * 95.17169 * 9 7 5 11 11 H 1.48496 * 109.46914 * 215.17033 * 9 7 5 12 12 H 1.48502 * 109.47209 * 335.16888 * 9 7 5 13 13 C 1.46499 * 119.99727 * 119.70306 * 4 2 1 14 14 C 1.50706 * 109.47306 * 275.98863 * 13 4 2 15 15 C 1.34328 * 126.16949 * 94.98200 * 14 13 4 16 16 O 1.34748 * 107.11088 * 179.81191 * 15 14 13 17 17 C 1.33962 * 107.76015 * 0.35724 * 16 15 14 18 18 N 1.30264 * 108.75880 * 359.63831 * 17 16 15 19 19 H 1.08994 * 109.47293 * 306.38766 * 1 2 3 20 20 H 1.09000 * 109.47167 * 66.38877 * 1 2 3 21 21 H 1.09001 * 109.47314 * 186.38410 * 1 2 3 22 22 H 1.08993 * 109.47051 * 240.00381 * 2 1 3 23 23 H 1.08995 * 109.47306 * 182.53276 * 3 2 1 24 24 H 1.09006 * 109.47372 * 302.54071 * 3 2 1 25 25 H 1.08999 * 109.46888 * 62.53640 * 3 2 1 26 26 H 0.96998 * 120.00091 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47779 * 155.98329 * 13 4 2 28 28 H 1.09004 * 109.47460 * 35.98246 * 13 4 2 29 29 H 1.08006 * 126.44012 * 0.05480 * 15 14 13 30 30 H 1.07995 * 125.62439 * 179.89299 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6926 -0.2192 2.4399 6 1 0.7187 0.2134 2.6154 7 6 2.6140 -0.2975 3.4750 8 7 2.2031 -0.5105 4.7072 9 14 4.4373 -0.1003 3.1194 10 1 4.8366 1.3114 3.3491 11 1 5.2160 -0.9878 4.0201 12 1 4.7086 -0.4680 1.7064 13 6 2.8552 -1.8854 1.0617 14 6 1.9768 -3.0953 0.8723 15 6 1.6243 -3.6429 -0.3025 16 8 0.8409 -4.7039 -0.0262 17 6 0.7189 -4.7860 1.3053 18 7 1.4040 -3.8207 1.8491 19 1 -0.3633 0.6096 0.8272 20 1 -0.3633 0.4116 -0.9416 21 1 -0.3634 -1.0213 0.1143 22 1 1.8933 -0.5137 -0.8900 23 1 3.1290 1.4430 -0.0454 24 1 1.6399 1.9694 -0.8664 25 1 1.7142 1.9430 0.9118 26 1 2.8471 -0.5655 5.4305 27 1 3.4571 -2.0108 1.9618 28 1 3.5114 -1.7743 0.1985 29 1 1.9172 -3.2998 -1.2839 30 1 0.1500 -5.5322 1.8400 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379393876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = 24.482337 kcal Electronic energy + Delta-G solvation = -14356.553236 eV Core-core repulsion = 11960.780329 eV Total energy + Delta-G solvation = -2395.772908 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.00049 -38.53848 -35.60884 -34.26468 -32.79336 -30.77785 -27.79659 -27.50026 -25.22852 -23.43106 -22.13725 -21.14728 -18.85182 -17.88186 -17.29303 -16.84029 -16.42848 -15.92154 -15.22857 -14.99269 -14.72733 -14.22065 -13.96287 -13.54647 -13.17078 -12.93138 -12.62958 -12.25223 -12.14749 -12.00543 -11.93236 -11.53785 -11.33284 -11.13707 -10.49067 -9.66388 -8.74063 -8.17568 -5.38992 0.76115 1.37126 1.45113 1.52930 1.96457 2.20025 2.51473 3.06566 3.52318 3.56903 4.13527 4.28033 4.28889 4.55931 4.64567 4.74081 4.91280 4.95052 5.05790 5.11128 5.14658 5.18506 5.23009 5.55720 5.59715 5.64805 6.01124 6.28798 7.05440 7.11373 7.75666 8.17006 9.03197 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.014498 C = 0.011415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.635058 B = 1930.880712 C = 2452.278231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.157 3.843 3 C -0.148 4.148 4 N -0.595 5.595 5 C -0.245 4.245 6 H 0.030 0.970 7 C -0.006 4.006 8 N -0.930 5.930 9 Si 0.908 3.092 10 H -0.296 1.296 11 H -0.306 1.306 12 H -0.234 1.234 13 C 0.214 3.786 14 C -0.043 4.043 15 C -0.072 4.072 16 O -0.213 6.213 17 C 0.161 3.839 18 N -0.522 5.522 19 H 0.025 0.975 20 H 0.076 0.924 21 H 0.027 0.973 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.258 0.742 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.247 0.753 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -5.234 -13.878 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.052 3.948 3 C -0.206 4.206 4 N -0.317 5.317 5 C -0.375 4.375 6 H 0.048 0.952 7 C -0.203 4.203 8 N -0.572 5.572 9 Si 0.734 3.266 10 H -0.224 1.224 11 H -0.234 1.234 12 H -0.157 1.157 13 C 0.088 3.912 14 C -0.164 4.164 15 C -0.143 4.143 16 O -0.100 6.100 17 C -0.065 4.065 18 N -0.251 5.251 19 H 0.045 0.955 20 H 0.095 0.905 21 H 0.047 0.953 22 H 0.103 0.897 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.263 0.737 30 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -0.067 -5.148 -13.116 14.090 hybrid contribution 0.564 0.124 0.351 0.676 sum 0.497 -5.024 -12.765 13.727 Atomic orbital electron populations 1.22008 0.97677 0.99677 1.00619 1.20701 0.92968 0.92676 0.88458 1.22059 1.00324 0.97305 1.00952 1.44264 1.60482 1.24800 1.02183 1.18216 0.95877 1.37157 0.86208 0.95189 1.25899 1.01326 0.98650 0.94463 1.70217 1.35913 1.49307 1.01787 0.86341 0.83709 0.76810 0.79693 1.22422 1.23363 1.15659 1.19693 0.90167 0.81477 0.99908 1.23141 1.04023 1.00041 0.89177 1.25227 0.98128 0.89354 1.01541 1.84428 1.55076 1.42601 1.27858 1.28921 1.00198 0.99589 0.77819 1.70442 1.11848 1.06632 1.36197 0.95531 0.90515 0.95329 0.89710 0.93694 0.90633 0.94855 0.93305 0.94359 0.89375 0.73687 0.70163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.05 71.98 0.65 -4.36 16 2 C 0.16 5.68 3.36 44.99 0.15 5.83 16 3 C -0.15 -5.06 9.20 71.98 0.66 -4.40 16 4 N -0.60 -27.28 2.00 -682.35 -1.37 -28.65 16 5 C -0.25 -13.93 8.48 84.03 0.71 -13.22 16 6 H 0.03 1.94 7.15 -2.91 -0.02 1.92 16 7 C -0.01 -0.33 4.99 84.86 0.42 0.09 16 8 N -0.93 -60.01 13.97 21.65 0.30 -59.71 16 9 Si 0.91 45.60 26.29 68.60 1.80 47.40 16 10 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 11 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 12 H -0.23 -10.41 5.95 99.48 0.59 -9.82 16 13 C 0.21 9.07 4.38 85.64 0.38 9.45 16 14 C -0.04 -1.68 6.68 41.26 0.28 -1.41 16 15 C -0.07 -2.13 12.08 66.93 0.81 -1.32 16 16 O -0.21 -6.23 10.77 -3.64 -0.04 -6.27 16 17 C 0.16 5.00 13.23 130.48 1.73 6.73 16 18 N -0.52 -22.38 11.29 -304.06 -3.43 -25.81 16 19 H 0.03 1.07 7.27 -2.39 -0.02 1.05 16 20 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.08 2.47 7.87 -2.39 -0.02 2.46 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 26 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.04 1.87 4.58 -2.39 -0.01 1.86 16 28 H 0.09 3.02 8.05 -2.38 -0.02 3.00 16 29 H 0.25 4.83 8.06 -2.91 -0.02 4.80 16 30 H 0.28 5.53 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -75.15 255.42 4.06 -71.09 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.01 Total: 4.55 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.79 Total: -2.60 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -4.50 Total: -114.17 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.04 Total: -6.27 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.80 Total: 47.40 kcal Total: -75.15 4.06 -71.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379393876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.577 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds