Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00450 * 2 1 4 4 C 1.52998 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47408 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47151 * 179.97438 * 5 4 3 7 7 C 1.36417 * 126.55507 * 265.02685 * 6 5 4 8 8 C 1.36219 * 107.19395 * 179.97438 * 7 6 5 9 9 N 1.32760 * 108.61786 * 0.26155 * 8 7 6 10 10 C 1.32988 * 109.22557 * 359.56535 * 9 8 7 11 11 C 1.39992 * 125.96482 * 180.17310 * 10 9 8 12 12 H 1.08003 * 119.99981 * 174.56154 * 11 10 9 13 13 C 1.40240 * 120.00195 * 354.56343 * 11 10 9 14 14 N 1.30691 * 119.99838 * 6.06697 * 13 11 10 15 15 Si 1.86797 * 120.00064 * 186.06552 * 13 11 10 16 16 H 1.48502 * 109.47038 * 94.98512 * 15 13 11 17 17 H 1.48503 * 109.47156 * 214.97914 * 15 13 11 18 18 H 1.48494 * 109.47439 * 334.98029 * 15 13 11 19 19 H 1.09004 * 109.46950 * 299.99852 * 1 2 3 20 20 H 1.09000 * 109.47218 * 59.99171 * 1 2 3 21 21 H 1.09002 * 109.47542 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47109 * 60.00218 * 3 2 1 23 23 H 1.08999 * 109.47353 * 300.00021 * 3 2 1 24 24 H 1.08992 * 109.47525 * 59.99970 * 4 3 2 25 25 H 1.09007 * 109.46856 * 299.99962 * 4 3 2 26 26 H 1.09002 * 109.46932 * 59.99877 * 5 4 3 27 27 H 1.08997 * 109.46423 * 300.00028 * 5 4 3 28 28 H 1.07996 * 126.40373 * 359.93529 * 7 6 5 29 29 H 1.07995 * 125.69533 * 179.97438 * 8 7 6 30 30 H 0.97001 * 119.99979 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6183 2.4665 0.0000 7 6 6.4357 2.4965 1.0917 8 6 7.7137 2.3555 0.6419 9 7 7.6879 2.2481 -0.6811 10 6 6.4273 2.3061 -1.1007 11 6 5.9990 2.2243 -2.4310 12 1 4.9434 2.1943 -2.6575 13 6 6.9405 2.1811 -3.4694 14 7 8.2150 2.0976 -3.1928 15 14 6.3728 2.2430 -5.2480 16 1 6.4247 3.6447 -5.7357 17 1 7.2631 1.3957 -6.0815 18 1 4.9795 1.7378 -5.3408 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5140 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6887 1.8463 0.8901 23 1 1.6887 1.8463 -0.8900 24 1 3.8567 0.6438 -0.8908 25 1 3.8574 0.6434 0.8892 26 1 3.8366 3.1226 0.8905 27 1 3.8359 3.1236 -0.8895 28 1 6.1273 2.6112 2.1204 29 1 8.6004 2.3390 1.2581 30 1 8.8663 2.0682 -3.9111 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379396352.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = 4.146244 kcal Electronic energy + Delta-G solvation = -13611.967144 eV Core-core repulsion = 11215.312397 eV Total energy + Delta-G solvation = -2396.654747 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.82235 -37.87279 -34.11871 -33.24998 -30.28374 -28.56286 -26.81749 -25.00301 -24.32535 -21.48707 -19.82772 -19.17109 -16.91239 -16.12066 -16.01677 -15.45281 -14.91322 -14.42565 -14.01922 -13.44485 -12.87938 -12.48900 -12.11818 -11.91107 -11.63985 -11.41766 -11.16450 -11.09285 -10.89820 -10.53765 -10.36685 -10.06461 -9.62452 -9.15222 -7.91296 -7.70717 -6.98794 -6.34924 -4.21690 3.07591 3.18838 3.21695 3.59674 3.86231 4.07520 4.49053 4.78868 5.12378 5.16787 5.28726 5.41454 5.53301 5.55653 5.59109 5.64994 5.87257 5.94195 6.36779 6.37539 6.61350 6.64199 7.19878 7.21829 7.35205 7.68467 8.14839 8.29185 8.64981 9.02836 9.39347 10.31686 10.59087 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.009805 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.475949 B = 2854.998556 C = 3848.921290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.135 3.865 6 N -0.507 5.507 7 C -0.179 4.179 8 C -0.016 4.016 9 N -0.520 5.520 10 C 0.376 3.624 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.083 3.917 14 N -0.743 5.743 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.264 1.264 19 H 0.038 0.962 20 H 0.040 0.960 21 H 0.083 0.917 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 -0.324 3.104 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.173 4.173 5 C 0.010 3.990 6 N -0.197 5.197 7 C -0.309 4.309 8 C -0.169 4.169 9 N -0.241 5.241 10 C 0.133 3.867 11 C -0.502 4.502 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.368 5.368 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.188 1.188 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.101 0.899 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.032 -0.577 2.597 11.348 hybrid contribution -1.219 0.366 -0.069 1.274 sum -12.250 -0.212 2.528 12.510 Atomic orbital electron populations 1.22713 0.81513 1.02487 0.99766 1.87906 1.19297 1.28426 1.95375 1.22483 0.94330 0.84340 0.99909 1.21928 0.92036 0.98886 1.04468 1.21050 0.80405 0.95505 1.02064 1.45375 1.04439 1.62335 1.07542 1.21820 0.92086 1.25951 0.91006 1.22132 0.94261 1.06464 0.94025 1.71287 1.17394 1.27975 1.07395 1.20288 0.83689 0.95117 0.87600 1.18095 0.93958 1.50954 0.87236 0.90501 1.25691 0.94433 0.93547 1.00427 1.70028 1.01229 1.32170 1.33342 0.86331 0.79521 0.78703 0.82213 1.19774 1.20284 1.18850 0.94333 0.94155 0.89856 0.93570 0.93090 0.89879 0.91219 0.91511 0.90355 0.84893 0.84977 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.85 10.70 -35.23 -0.38 -6.23 16 3 C 0.07 0.93 5.94 37.16 0.22 1.15 16 4 C -0.13 -2.34 5.91 -26.73 -0.16 -2.50 16 5 C 0.13 2.51 5.83 -4.04 -0.02 2.49 16 6 N -0.51 -12.26 2.81 -115.97 -0.33 -12.59 16 7 C -0.18 -4.25 11.60 -16.24 -0.19 -4.44 16 8 C -0.02 -0.42 11.85 -17.88 -0.21 -0.63 16 9 N -0.52 -15.55 9.43 -12.72 -0.12 -15.67 16 10 C 0.38 10.68 7.43 -155.60 -1.16 9.52 16 11 C -0.46 -12.78 8.99 -38.17 -0.34 -13.12 16 12 H 0.08 1.96 7.38 -52.48 -0.39 1.57 16 13 C 0.08 2.22 5.49 -17.29 -0.09 2.12 16 14 N -0.74 -21.25 11.92 55.56 0.66 -20.58 16 15 Si 0.91 19.49 29.57 -169.99 -5.03 14.47 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 19 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 20 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.42 7.68 -51.93 -0.40 1.02 16 28 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 29 H 0.13 3.04 8.06 -52.49 -0.42 2.61 16 30 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 264.39 15.07 3.98 3.98 Total: -1.00 -32.86 264.39 -6.19 -39.05 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.15 Total: 1.52 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.84 Total: -3.95 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.22 Total: -48.85 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.38 Total: -6.23 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.86 -6.19 -39.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396352.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.196 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds