Wall clock time and date at job start Mon Mar 30 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00450 * 2 1 4 4 C 1.52998 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47408 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47151 * 179.97438 * 5 4 3 7 7 C 1.36417 * 126.55507 * 265.02685 * 6 5 4 8 8 C 1.36219 * 107.19395 * 179.97438 * 7 6 5 9 9 N 1.32760 * 108.61786 * 0.26155 * 8 7 6 10 10 C 1.32988 * 109.22557 * 359.56535 * 9 8 7 11 11 C 1.39992 * 125.96482 * 180.17310 * 10 9 8 12 12 H 1.08003 * 119.99981 * 174.56154 * 11 10 9 13 13 C 1.40240 * 120.00195 * 354.56343 * 11 10 9 14 14 N 1.30691 * 119.99838 * 6.06697 * 13 11 10 15 15 Si 1.86797 * 120.00064 * 186.06552 * 13 11 10 16 16 H 1.48502 * 109.47038 * 94.98512 * 15 13 11 17 17 H 1.48503 * 109.47156 * 214.97914 * 15 13 11 18 18 H 1.48494 * 109.47439 * 334.98029 * 15 13 11 19 19 H 1.09004 * 109.46950 * 299.99852 * 1 2 3 20 20 H 1.09000 * 109.47218 * 59.99171 * 1 2 3 21 21 H 1.09002 * 109.47542 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47109 * 60.00218 * 3 2 1 23 23 H 1.08999 * 109.47353 * 300.00021 * 3 2 1 24 24 H 1.08992 * 109.47525 * 59.99970 * 4 3 2 25 25 H 1.09007 * 109.46856 * 299.99962 * 4 3 2 26 26 H 1.09002 * 109.46932 * 59.99877 * 5 4 3 27 27 H 1.08997 * 109.46423 * 300.00028 * 5 4 3 28 28 H 1.07996 * 126.40373 * 359.93529 * 7 6 5 29 29 H 1.07995 * 125.69533 * 179.97438 * 8 7 6 30 30 H 0.97001 * 119.99979 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6183 2.4665 0.0000 7 6 6.4357 2.4965 1.0917 8 6 7.7137 2.3555 0.6419 9 7 7.6879 2.2481 -0.6811 10 6 6.4273 2.3061 -1.1007 11 6 5.9990 2.2243 -2.4310 12 1 4.9434 2.1943 -2.6575 13 6 6.9405 2.1811 -3.4694 14 7 8.2150 2.0976 -3.1928 15 14 6.3728 2.2430 -5.2480 16 1 6.4247 3.6447 -5.7357 17 1 7.2631 1.3957 -6.0815 18 1 4.9795 1.7378 -5.3408 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5140 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6887 1.8463 0.8901 23 1 1.6887 1.8463 -0.8900 24 1 3.8567 0.6438 -0.8908 25 1 3.8574 0.6434 0.8892 26 1 3.8366 3.1226 0.8905 27 1 3.8359 3.1236 -0.8895 28 1 6.1273 2.6112 2.1204 29 1 8.6004 2.3390 1.2581 30 1 8.8663 2.0682 -3.9111 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379396352.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:03 Heat of formation + Delta-G solvation = -17.551236 kcal Electronic energy + Delta-G solvation = -13612.908017 eV Core-core repulsion = 11215.312397 eV Total energy + Delta-G solvation = -2397.595620 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.76387 -38.94135 -35.68614 -35.22900 -31.89437 -30.58209 -27.88799 -26.85747 -25.74911 -22.87241 -21.82421 -21.04019 -18.68508 -17.61294 -17.16300 -16.99385 -16.37479 -15.89139 -15.36420 -15.14518 -14.55909 -14.36653 -13.77389 -13.21310 -13.19759 -12.87047 -12.79041 -12.63762 -12.34538 -12.01941 -11.96676 -11.80530 -11.09396 -10.62020 -9.88096 -9.75588 -9.00828 -8.32524 -6.27485 1.36139 1.43250 1.58414 1.81795 2.26231 2.52854 2.77608 2.99767 3.64436 3.84133 4.11823 4.27020 4.30991 4.44812 4.51257 4.55662 4.59484 4.60795 4.74727 4.85265 5.00427 5.15603 5.23702 5.39571 5.73172 6.18353 6.24494 6.30476 6.70506 7.02581 7.41564 8.31524 8.64700 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.009805 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.475949 B = 2854.998556 C = 3848.921290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.074 3.926 4 C -0.124 4.124 5 C 0.128 3.872 6 N -0.507 5.507 7 C -0.151 4.151 8 C -0.061 4.061 9 N -0.569 5.569 10 C 0.340 3.660 11 C -0.490 4.490 12 H 0.088 0.912 13 C 0.030 3.970 14 N -0.794 5.794 15 Si 0.991 3.009 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.252 1.252 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.178 0.822 29 H 0.151 0.849 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.439 0.174 3.357 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.344 6.344 3 C -0.003 4.003 4 C -0.162 4.162 5 C 0.005 3.995 6 N -0.196 5.196 7 C -0.282 4.282 8 C -0.212 4.212 9 N -0.291 5.291 10 C 0.095 3.905 11 C -0.530 4.530 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.421 5.421 15 Si 0.811 3.189 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.176 1.176 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.113 0.887 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.195 0.805 29 H 0.168 0.832 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.555 -0.077 2.883 13.859 hybrid contribution -0.507 0.197 0.028 0.545 sum -14.062 0.120 2.910 14.361 Atomic orbital electron populations 1.22949 0.79138 1.03841 1.01137 1.87851 1.21908 1.28923 1.95673 1.22386 0.91552 0.84572 1.01808 1.21738 0.94911 0.97397 1.02185 1.21405 0.77243 0.96716 1.04101 1.45675 1.06653 1.60719 1.06571 1.22474 0.91291 1.21835 0.92588 1.22606 0.96397 1.08794 0.93391 1.71154 1.19235 1.29168 1.09527 1.20591 0.84280 0.96620 0.89006 1.18514 0.94797 1.51898 0.87751 0.89385 1.26781 0.94227 0.92376 1.05447 1.70174 1.02825 1.33894 1.35164 0.85082 0.79383 0.79010 0.75418 1.18880 1.19774 1.17559 0.92562 0.93103 0.88684 0.90785 0.91950 0.93473 0.92186 0.87731 0.89969 0.80525 0.83204 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.79 10.70 -148.98 -1.59 -13.38 16 3 C 0.07 1.86 5.94 71.98 0.43 2.29 16 4 C -0.12 -4.14 5.91 30.60 0.18 -3.96 16 5 C 0.13 4.51 5.83 86.38 0.50 5.01 16 6 N -0.51 -24.15 2.81 -520.83 -1.46 -25.62 16 7 C -0.15 -6.94 11.60 83.51 0.97 -5.97 16 8 C -0.06 -3.21 11.85 84.08 1.00 -2.21 16 9 N -0.57 -35.06 9.43 -194.17 -1.83 -36.90 16 10 C 0.34 19.70 7.43 133.59 0.99 20.69 16 11 C -0.49 -27.55 8.99 23.18 0.21 -27.34 16 12 H 0.09 4.52 7.38 -2.91 -0.02 4.50 16 13 C 0.03 1.66 5.49 85.35 0.47 2.13 16 14 N -0.79 -46.98 11.92 21.88 0.26 -46.72 16 15 Si 0.99 40.33 29.57 68.60 2.03 42.36 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 19 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 20 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 21 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.07 1.47 8.14 -2.38 -0.02 1.46 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.08 2.83 7.68 -2.39 -0.02 2.82 16 28 H 0.18 6.41 8.06 -2.91 -0.02 6.38 16 29 H 0.15 6.96 8.06 -2.91 -0.02 6.94 16 30 H 0.28 14.79 8.29 -92.71 -0.77 14.02 16 Total: -1.00 -73.62 264.39 4.51 -69.11 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.11 Total: 18.80 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.99 Total: -7.67 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.03 Total: -109.23 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.59 Total: -13.38 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -73.62 4.51 -69.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396352.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.562 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds