Wall clock time and date at job start Mon Mar 30 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 H 1.09002 * 109.47336 * 325.00233 * 13 12 2 15 15 C 1.53000 * 109.46912 * 85.00230 * 13 12 2 16 16 C 1.50701 * 109.47338 * 205.00160 * 13 12 2 17 17 N 1.33247 * 125.52034 * 314.69301 * 16 13 12 18 18 C 1.30835 * 109.82196 * 179.85190 * 17 16 13 19 19 N 1.34426 * 108.08168 * 0.40966 * 18 17 16 20 20 H 0.97001 * 126.82851 * 179.79488 * 19 18 17 21 21 N 1.30705 * 125.52896 * 135.00132 * 16 13 12 22 22 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.00893 * 110.99635 * 321.04453 * 12 2 1 27 27 H 1.08995 * 109.47753 * 59.99865 * 15 13 12 28 28 H 1.09005 * 109.46867 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47333 * 299.99359 * 15 13 12 30 30 H 1.08003 * 125.96001 * 180.19204 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2576 0.9331 -2.2906 15 6 3.4111 0.9810 -2.3223 16 6 1.9785 -0.5673 -3.6260 17 7 2.6392 -1.6923 -3.8969 18 6 2.3169 -2.1196 -5.0907 19 7 1.4339 -1.2547 -5.6192 20 1 1.0194 -1.3089 -6.4945 21 7 1.2300 -0.2572 -4.6516 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7006 1.1552 3.4844 26 1 1.4495 -1.4977 -1.4101 27 1 4.2359 0.2707 -2.3786 28 1 3.4579 1.6597 -3.1740 29 1 3.4862 1.5526 -1.3972 30 1 2.6968 -3.0100 -5.5697 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379416640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:19 Heat of formation + Delta-G solvation = 85.959212 kcal Electronic energy + Delta-G solvation = -13760.240023 eV Core-core repulsion = 11399.425704 eV Total energy + Delta-G solvation = -2360.814319 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.93298 -36.58900 -33.41880 -31.95682 -31.16342 -29.72531 -26.92243 -25.08109 -23.37064 -22.51760 -20.11359 -19.36344 -18.14376 -16.32012 -15.29984 -15.26661 -14.70294 -14.48973 -13.59375 -12.89293 -12.54157 -11.96300 -11.82615 -11.55812 -11.34044 -11.10193 -10.86081 -10.60307 -10.43695 -10.03772 -9.97786 -9.83764 -9.73588 -9.50792 -8.90633 -8.28588 -7.17146 -5.91460 -3.93825 1.72677 2.75578 3.11728 3.38940 3.44630 3.49735 4.29646 4.50230 4.78675 5.07845 5.40285 5.46918 5.85637 5.97474 6.26826 6.41253 6.46412 6.59752 6.75729 6.86894 6.90922 7.10673 7.16693 7.41724 7.80851 7.96742 8.25393 8.36496 8.60557 8.68590 9.14005 9.71068 11.15877 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.055554 B = 0.007165 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.894018 B = 3906.898543 C = 4002.071252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.490 4.490 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.663 5.663 13 C 0.175 3.825 14 H 0.057 0.943 15 C -0.129 4.129 16 C 0.241 3.759 17 N -0.516 5.516 18 C 0.248 3.752 19 N -0.494 5.494 20 H 0.437 0.563 21 N -0.322 5.322 22 H 0.027 0.973 23 H 0.090 0.910 24 H 0.005 0.995 25 H 0.259 0.741 26 H 0.329 0.671 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -3.504 -14.439 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.102 3.898 3 H 0.056 0.944 4 C -0.529 4.529 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.295 5.295 13 C 0.063 3.937 14 H 0.075 0.925 15 C -0.188 4.188 16 C -0.042 4.042 17 N -0.244 5.244 18 C -0.051 4.051 19 N -0.212 5.212 20 H 0.281 0.719 21 N -0.151 5.151 22 H 0.046 0.954 23 H 0.109 0.891 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.482 -2.828 -13.874 14.237 hybrid contribution -0.987 -0.664 -0.205 1.207 sum 0.496 -3.492 -14.079 14.514 Atomic orbital electron populations 1.22464 1.00837 0.99200 1.00539 1.19279 0.89477 0.94653 0.86350 0.94430 1.21150 1.29887 1.12477 0.89411 0.91759 1.24942 0.95384 0.95268 0.98997 1.69884 1.37409 1.23377 1.23252 0.86500 0.78368 0.80083 0.82437 1.20773 1.21538 1.19947 1.60911 1.58352 1.08213 1.01990 1.19825 0.98511 0.92319 0.83090 0.92506 1.21723 0.96529 0.99267 1.01246 1.24711 0.91066 0.92314 0.96106 1.70518 1.27241 1.12841 1.13759 1.26205 0.90866 0.96725 0.91312 1.48159 1.36321 1.19555 1.17162 0.71873 1.78033 1.25345 1.11627 1.00092 0.95425 0.89109 0.97639 0.93141 0.85324 0.91600 0.93849 0.91065 0.76463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.92 37.16 0.33 -3.92 16 2 C 0.21 5.38 2.39 -68.86 -0.16 5.22 16 3 H 0.04 1.04 7.11 -51.93 -0.37 0.67 16 4 C -0.49 -13.81 8.84 -34.44 -0.30 -14.11 16 5 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.00 11.31 55.43 0.63 -25.37 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.66 -14.92 6.03 -102.17 -0.62 -15.53 16 13 C 0.18 3.46 2.97 -68.87 -0.20 3.26 16 14 H 0.06 1.17 7.11 -51.93 -0.37 0.80 16 15 C -0.13 -2.35 9.38 37.16 0.35 -2.00 16 16 C 0.24 4.34 6.63 -156.85 -1.04 3.30 16 17 N -0.52 -8.59 11.18 -11.98 -0.13 -8.72 16 18 C 0.25 2.81 13.13 -90.65 -1.19 1.62 16 19 N -0.49 -5.56 7.45 29.53 0.22 -5.34 16 20 H 0.44 2.97 8.96 -182.33 -1.63 1.34 16 21 N -0.32 -5.29 12.80 32.42 0.41 -4.87 16 22 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 24 H 0.00 0.11 7.43 -51.93 -0.39 -0.28 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.33 7.41 8.09 -39.30 -0.32 7.10 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.36 7.43 -51.93 -0.39 0.97 16 30 H 0.22 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -32.49 257.96 -7.95 -40.44 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.01 Total: 3.91 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.32 Total: -5.20 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.51 Total: -59.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.49 -7.95 -40.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379416640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.396 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds