Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 N 1.46893 * 109.47387 * 119.99848 * 2 1 3 13 13 C 1.46898 * 111.00268 * 274.99951 * 12 2 1 14 14 H 1.09008 * 109.47161 * 34.99845 * 13 12 2 15 15 C 1.52995 * 109.47448 * 274.99933 * 13 12 2 16 16 C 1.50703 * 109.47344 * 154.99329 * 13 12 2 17 17 N 1.33235 * 125.52287 * 44.69945 * 16 13 12 18 18 C 1.30834 * 109.83068 * 179.85087 * 17 16 13 19 19 N 1.34433 * 108.07202 * 0.40419 * 18 17 16 20 20 H 0.97001 * 126.81700 * 179.72008 * 19 18 17 21 21 N 1.30716 * 125.52759 * 224.99915 * 16 13 12 22 22 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 23 23 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 24 24 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 25 25 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00843 * 151.04239 * 12 2 1 27 27 H 1.08999 * 109.47716 * 179.97438 * 15 13 12 28 28 H 1.09008 * 109.46867 * 300.00091 * 15 13 12 29 29 H 1.09002 * 109.47349 * 59.99149 * 15 13 12 30 30 H 1.07998 * 125.96583 * 180.12387 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3468 14 1 1.2576 0.9330 2.2907 15 6 3.4111 0.9809 2.3223 16 6 1.9786 -0.5676 3.6259 17 7 2.6305 -1.6986 3.8922 18 6 2.3159 -2.1207 5.0899 19 7 1.4332 -1.2554 5.6186 20 1 1.0187 -1.3100 6.4938 21 7 1.2301 -0.2574 4.6516 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7089 1.1613 -3.4845 26 1 2.9173 -1.1205 1.0288 27 1 3.4576 1.6603 3.1735 28 1 4.2360 0.2705 2.3785 29 1 3.4863 1.5524 1.3972 30 1 2.6952 -3.0115 5.5685 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379416642.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = 83.070435 kcal Electronic energy + Delta-G solvation = -13756.466308 eV Core-core repulsion = 11395.526722 eV Total energy + Delta-G solvation = -2360.939586 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.79593 -36.60166 -33.41658 -31.90903 -31.06708 -29.67982 -26.84506 -25.14823 -23.46274 -22.45430 -20.00109 -19.27542 -18.03742 -16.47895 -15.26885 -15.16343 -14.58653 -14.07481 -13.76378 -13.23417 -12.40559 -12.29304 -11.85584 -11.62626 -11.40020 -10.93623 -10.67662 -10.60386 -10.33089 -10.07617 -10.02504 -9.75510 -9.70043 -9.36609 -8.77525 -8.43577 -7.21377 -5.98087 -4.03672 1.85232 2.86380 3.25054 3.32828 3.40612 3.45719 4.39948 4.45986 4.87014 5.21565 5.33846 5.55676 5.73910 5.79324 6.14866 6.37246 6.48108 6.59788 6.72080 6.95158 7.20276 7.22720 7.28472 7.55695 7.84252 7.95109 8.32548 8.38299 8.48190 8.73188 9.07850 9.62042 11.08484 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.055487 B = 0.007169 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.501202 B = 3904.752390 C = 4002.574105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.514 4.514 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.674 5.674 13 C 0.172 3.828 14 H 0.093 0.907 15 C -0.170 4.170 16 C 0.262 3.738 17 N -0.523 5.523 18 C 0.247 3.753 19 N -0.495 5.495 20 H 0.436 0.564 21 N -0.326 5.326 22 H 0.004 0.996 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -2.922 13.714 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.306 5.306 13 C 0.058 3.942 14 H 0.111 0.889 15 C -0.230 4.230 16 C -0.021 4.021 17 N -0.251 5.251 18 C -0.052 4.052 19 N -0.213 5.213 20 H 0.280 0.720 21 N -0.155 5.155 22 H 0.023 0.977 23 H 0.100 0.900 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.160 0.840 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.751 -2.588 13.459 13.817 hybrid contribution 0.754 -0.277 -0.237 0.838 sum 2.506 -2.865 13.222 13.759 Atomic orbital electron populations 1.21747 0.97981 0.99371 0.99350 1.19146 0.92493 0.92562 0.85269 0.97692 1.21296 1.31232 1.12474 0.90306 0.92023 1.24910 0.95094 0.95017 0.99013 1.69916 1.36805 1.22968 1.23295 0.86467 0.78574 0.79646 0.82872 1.19713 1.21061 1.21142 1.60537 1.33225 1.31844 1.04966 1.19705 0.97833 0.91293 0.85325 0.88891 1.22415 0.97747 1.00607 1.02230 1.24562 0.90529 0.91674 0.95376 1.70410 1.28330 1.12797 1.13562 1.26099 0.91131 0.96759 0.91211 1.48112 1.36294 1.19774 1.17162 0.72007 1.77997 1.25193 1.11911 1.00352 0.97708 0.90019 0.95041 0.93033 0.83982 0.93175 0.92072 0.90982 0.76697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.18 37.16 0.34 -2.90 16 2 C 0.21 5.45 2.41 -68.87 -0.17 5.29 16 3 H 0.01 0.15 7.11 -51.93 -0.37 -0.22 16 4 C -0.51 -14.26 8.59 -34.44 -0.30 -14.56 16 5 H 0.06 1.70 7.62 -52.49 -0.40 1.30 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.67 -15.14 6.02 -102.17 -0.62 -15.75 16 13 C 0.17 3.38 2.94 -68.87 -0.20 3.18 16 14 H 0.09 1.91 7.11 -51.92 -0.37 1.54 16 15 C -0.17 -2.93 9.13 37.15 0.34 -2.59 16 16 C 0.26 4.84 6.99 -156.85 -1.10 3.74 16 17 N -0.52 -8.90 11.18 -11.97 -0.13 -9.04 16 18 C 0.25 2.95 13.13 -90.65 -1.19 1.76 16 19 N -0.50 -5.91 7.45 29.53 0.22 -5.69 16 20 H 0.44 3.24 8.96 -182.34 -1.63 1.61 16 21 N -0.33 -5.56 12.80 32.42 0.41 -5.14 16 22 H 0.00 0.09 7.43 -51.93 -0.39 -0.29 16 23 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.34 7.64 7.96 -39.29 -0.31 7.33 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.03 8.13 -51.92 -0.42 0.61 16 29 H 0.07 1.30 7.43 -51.93 -0.39 0.91 16 30 H 0.22 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 257.76 15.07 3.88 3.88 Total: -1.00 -32.44 257.76 -7.99 -40.43 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.00 Total: 4.31 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.36 Total: -4.47 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.51 Total: -60.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.44 -7.99 -40.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379416642.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.496 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds