Wall clock time and date at job start Mon Mar 30 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47211 * 180.02562 * 13 12 2 15 15 N 1.46502 * 109.46922 * 180.02562 * 14 13 12 16 16 C 1.35488 * 126.97852 * 269.68365 * 15 14 13 17 17 N 1.30522 * 107.30472 * 179.83969 * 16 15 14 18 18 N 1.28595 * 109.67325 * 0.43784 * 17 16 15 19 19 C 1.30522 * 109.67360 * 359.72416 * 18 17 16 20 20 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 21 21 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 24 24 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 25 25 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 26 26 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 27 27 H 1.08996 * 109.47170 * 300.00478 * 14 13 12 28 28 H 1.08997 * 109.47309 * 60.00114 * 14 13 12 29 29 H 1.07999 * 126.34854 * 359.97438 * 16 15 14 30 30 H 1.07995 * 126.34735 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5963 -0.5330 3.5741 15 7 2.6583 0.3794 4.7186 16 6 3.7112 1.1447 5.0947 17 7 3.3487 1.8081 6.1586 18 7 2.1411 1.4967 6.4724 19 6 1.6764 0.6248 5.6195 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 1.9111 -0.5221 -4.4375 24 1 2.9174 -1.1205 1.0286 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6161 2.5525 27 1 1.9203 -1.3569 3.8029 28 1 3.5917 -0.9264 3.3683 29 1 4.6717 1.1977 4.6037 30 1 0.6919 0.1810 5.6300 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381401662.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:16 Heat of formation + Delta-G solvation = 86.176475 kcal Electronic energy + Delta-G solvation = -13447.382799 eV Core-core repulsion = 11086.577901 eV Total energy + Delta-G solvation = -2360.804898 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.09609 -37.03929 -35.01265 -32.58437 -30.59325 -30.52041 -27.51333 -25.26696 -23.24452 -22.30046 -21.63362 -20.15552 -17.45083 -16.99800 -16.02992 -15.68325 -15.14700 -14.88945 -14.31446 -13.89559 -13.44100 -13.17771 -12.55423 -12.25573 -11.75119 -11.56323 -11.34757 -11.01172 -10.79457 -10.42683 -10.27151 -10.16224 -9.61929 -9.45796 -9.20387 -8.74887 -7.86099 -6.23555 -4.25161 1.79449 2.44797 2.87466 3.16875 3.26520 3.29053 4.25916 4.44123 4.48821 4.57603 4.78687 5.05006 5.13533 5.20971 5.28164 5.51351 5.85869 5.88531 6.10308 6.20820 6.35394 6.51344 6.62297 6.80350 7.18224 7.36806 7.64526 8.04401 8.40631 8.67510 8.78903 9.37563 10.89094 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.060548 B = 0.006144 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.334079 B = 4556.512314 C = 4680.049752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.184 3.816 3 H 0.003 0.997 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.674 5.674 13 C 0.043 3.957 14 C 0.105 3.895 15 N -0.469 5.469 16 C 0.151 3.849 17 N -0.305 5.305 18 N -0.306 5.306 19 C 0.153 3.847 20 H 0.059 0.941 21 H 0.025 0.975 22 H 0.039 0.961 23 H 0.266 0.734 24 H 0.342 0.658 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.216 0.784 30 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 0.795 12.036 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.076 3.924 3 H 0.020 0.980 4 C -0.564 4.564 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.223 1.223 12 N -0.307 5.307 13 C -0.088 4.088 14 C -0.018 4.018 15 N -0.160 5.160 16 C -0.137 4.137 17 N -0.145 5.145 18 N -0.146 5.146 19 C -0.135 4.135 20 H 0.079 0.921 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.161 0.839 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.233 0.767 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.406 1.474 13.155 13.244 hybrid contribution 0.045 0.377 -1.767 1.808 sum -0.362 1.851 11.388 11.543 Atomic orbital electron populations 1.22083 0.98477 1.01184 0.97896 1.19544 0.91905 0.93003 0.87963 0.97986 1.21038 1.32816 1.14035 0.88482 0.90214 1.24918 0.95587 0.96679 0.95724 1.69876 1.45097 1.40183 0.98030 0.86814 0.80739 0.83437 0.76947 1.20362 1.19470 1.22322 1.60506 1.33032 1.32067 1.05059 1.22265 1.00898 0.94707 0.90944 1.22066 1.04753 0.91510 0.83427 1.46573 1.12162 1.33870 1.23357 1.26531 0.95700 0.94269 0.97223 1.74222 1.06415 1.21576 1.12293 1.74224 1.04094 1.13125 1.23125 1.26536 0.97204 1.00408 0.89398 0.92141 0.95618 0.94280 0.92376 0.83949 0.95118 0.90896 0.87458 0.88395 0.76748 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.89 37.16 0.33 -2.56 16 2 C 0.18 4.03 2.19 -68.86 -0.15 3.88 16 3 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 4 C -0.53 -13.83 9.17 -34.44 -0.32 -14.14 16 5 H 0.08 2.25 7.86 -52.49 -0.41 1.83 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 8 Si 0.89 21.23 24.37 -169.99 -4.14 17.09 16 9 H -0.28 -6.45 6.88 56.52 0.39 -6.06 16 10 H -0.27 -6.21 6.52 56.52 0.37 -5.84 16 11 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 12 N -0.67 -11.68 6.30 -107.95 -0.68 -12.36 16 13 C 0.04 0.58 5.81 -3.83 -0.02 0.56 16 14 C 0.11 1.04 6.46 -4.04 -0.03 1.01 16 15 N -0.47 -5.16 2.75 -119.98 -0.33 -5.49 16 16 C 0.15 1.77 12.74 -89.95 -1.15 0.63 16 17 N -0.31 -4.62 12.21 29.69 0.36 -4.26 16 18 N -0.31 -4.61 12.21 29.69 0.36 -4.25 16 19 C 0.15 1.78 12.74 -89.94 -1.15 0.63 16 20 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 21 H 0.02 0.46 7.45 -51.93 -0.39 0.07 16 22 H 0.04 0.86 3.28 -51.93 -0.17 0.69 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.34 5.75 8.22 -39.29 -0.32 5.43 16 25 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 26 H 0.07 1.04 7.44 -51.93 -0.39 0.66 16 27 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.22 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 253.77 15.07 3.82 3.82 Total: -1.00 -31.66 253.77 -6.15 -37.82 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.75 Total: 1.15 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.57 Total: -8.05 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.49 Total: -51.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.66 -6.15 -37.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381401662.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.992 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds