Wall clock time and date at job start Mon Mar 30 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47211 * 180.02562 * 13 12 2 15 15 N 1.46502 * 109.46922 * 180.02562 * 14 13 12 16 16 C 1.35488 * 126.97852 * 269.68365 * 15 14 13 17 17 N 1.30522 * 107.30472 * 179.83969 * 16 15 14 18 18 N 1.28595 * 109.67325 * 0.43784 * 17 16 15 19 19 C 1.30522 * 109.67360 * 359.72416 * 18 17 16 20 20 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 21 21 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 24 24 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 25 25 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 26 26 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 27 27 H 1.08996 * 109.47170 * 300.00478 * 14 13 12 28 28 H 1.08997 * 109.47309 * 60.00114 * 14 13 12 29 29 H 1.07999 * 126.34854 * 359.97438 * 16 15 14 30 30 H 1.07995 * 126.34735 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5963 -0.5330 3.5741 15 7 2.6583 0.3794 4.7186 16 6 3.7112 1.1447 5.0947 17 7 3.3487 1.8081 6.1586 18 7 2.1411 1.4967 6.4724 19 6 1.6764 0.6248 5.6195 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 1.9111 -0.5221 -4.4375 24 1 2.9174 -1.1205 1.0286 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6161 2.5525 27 1 1.9203 -1.3569 3.8029 28 1 3.5917 -0.9264 3.3683 29 1 4.6717 1.1977 4.6037 30 1 0.6919 0.1810 5.6300 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381401662.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:15 Heat of formation + Delta-G solvation = 64.741440 kcal Electronic energy + Delta-G solvation = -13448.312292 eV Core-core repulsion = 11086.577901 eV Total energy + Delta-G solvation = -2361.734391 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.01308 -38.37901 -36.23482 -34.39603 -32.03519 -31.52951 -28.71306 -27.15366 -24.38503 -23.22958 -22.56626 -21.83327 -18.94467 -18.31318 -17.39331 -16.86786 -16.21104 -16.03914 -15.46529 -15.33307 -15.03233 -14.60562 -14.11309 -13.76327 -13.13365 -12.83010 -12.69208 -12.49341 -12.40393 -12.05516 -11.49658 -11.34818 -11.20573 -11.00523 -10.79474 -10.41882 -9.29216 -8.33900 -6.38541 0.93023 1.29314 1.33809 1.43084 1.59841 1.92569 2.27901 3.01967 3.39830 3.66082 3.80164 3.93141 3.99643 4.36869 4.41124 4.42997 4.56813 4.67790 4.81441 4.86238 4.99472 5.01013 5.24542 5.45981 5.59100 5.88805 5.99436 6.41568 6.57821 6.77978 7.28520 7.74405 8.82136 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.060548 B = 0.006144 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.334079 B = 4556.512314 C = 4680.049752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.187 3.813 3 H -0.005 1.005 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.943 5.943 8 Si 0.948 3.052 9 H -0.267 1.267 10 H -0.254 1.254 11 H -0.300 1.300 12 N -0.672 5.672 13 C 0.046 3.954 14 C 0.119 3.881 15 N -0.468 5.468 16 C 0.158 3.842 17 N -0.350 5.350 18 N -0.351 5.351 19 C 0.162 3.838 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.028 0.972 23 H 0.267 0.733 24 H 0.344 0.656 25 H 0.023 0.977 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.118 0.882 29 H 0.247 0.753 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 1.107 13.160 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.077 3.923 3 H 0.012 0.988 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.583 5.583 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.178 1.178 11 H -0.228 1.228 12 N -0.304 5.304 13 C -0.084 4.084 14 C -0.004 4.004 15 N -0.158 5.158 16 C -0.131 4.131 17 N -0.189 5.189 18 N -0.190 5.190 19 C -0.127 4.127 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.163 0.837 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.263 0.737 30 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.153 1.792 14.325 14.482 hybrid contribution 0.338 0.205 -2.085 2.122 sum -0.816 1.997 12.240 12.428 Atomic orbital electron populations 1.22000 0.97276 1.01294 0.98821 1.19361 0.92828 0.92125 0.87942 0.98756 1.21384 1.31505 1.12894 0.90448 0.93395 1.25730 0.97142 0.99686 0.95538 1.70017 1.47333 1.42337 0.98649 0.85872 0.79387 0.80111 0.77087 1.19274 1.17810 1.22778 1.60385 1.33273 1.32341 1.04374 1.22263 1.00941 0.94293 0.90938 1.21985 1.06286 0.90781 0.81326 1.46628 1.11869 1.33932 1.23396 1.27150 0.96764 0.92978 0.96219 1.74141 1.07031 1.23464 1.14262 1.74142 1.04641 1.15102 1.25079 1.27191 0.98189 0.98995 0.88334 0.92510 0.92559 0.95381 0.92421 0.83726 0.95830 0.91075 0.85646 0.86367 0.73667 0.73347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 8.89 71.99 0.64 -4.66 16 2 C 0.19 7.83 2.19 44.17 0.10 7.93 16 3 H -0.01 -0.22 6.86 -2.39 -0.02 -0.24 16 4 C -0.52 -27.54 9.17 25.60 0.23 -27.31 16 5 H 0.05 2.76 7.86 -2.91 -0.02 2.73 16 6 C 0.02 0.96 5.45 84.65 0.46 1.42 16 7 N -0.94 -56.40 13.96 21.45 0.30 -56.10 16 8 Si 0.95 43.14 24.37 68.60 1.67 44.81 16 9 H -0.27 -11.62 6.88 99.48 0.68 -10.93 16 10 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 11 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 12 N -0.67 -21.64 6.30 -495.43 -3.12 -24.76 16 13 C 0.05 1.11 5.81 86.30 0.50 1.61 16 14 C 0.12 1.87 6.46 86.38 0.56 2.43 16 15 N -0.47 -8.79 2.75 -533.50 -1.47 -10.26 16 16 C 0.16 3.32 12.74 180.11 2.30 5.62 16 17 N -0.35 -10.20 12.21 -59.99 -0.73 -10.93 16 18 N -0.35 -10.14 12.21 -59.99 -0.73 -10.87 16 19 C 0.16 3.33 12.74 180.11 2.30 5.62 16 20 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 21 H 0.06 1.83 7.45 -2.39 -0.02 1.81 16 22 H 0.03 1.14 3.28 -2.39 -0.01 1.14 16 23 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 24 H 0.34 10.94 8.22 -89.70 -0.74 10.20 16 25 H 0.02 0.61 8.05 -2.39 -0.02 0.60 16 26 H 0.07 1.76 7.44 -2.39 -0.02 1.75 16 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.25 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.25 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -69.28 253.77 3.32 -65.96 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.32 Total: 9.49 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 7.08 Total: -7.34 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -5.75 Total: -112.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.67 Total: 44.81 kcal Total: -69.28 3.32 -65.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381401662.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.700 kcal (2) G-P(sol) polarization free energy of solvation -69.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds