Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99793 * 2 1 4 4 H 1.48504 * 109.47195 * 270.00313 * 3 2 1 5 5 H 1.48503 * 109.47235 * 30.00091 * 3 2 1 6 6 H 1.48504 * 109.47375 * 150.00652 * 3 2 1 7 7 C 1.37877 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47436 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00024 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47074 * 180.02562 * 12 11 10 14 14 N 1.46506 * 109.46992 * 179.97438 * 13 12 11 15 15 C 1.35488 * 126.98016 * 269.68450 * 14 13 12 16 16 N 1.30527 * 107.30683 * 179.84146 * 15 14 13 17 17 N 1.28598 * 109.67046 * 0.43713 * 16 15 14 18 18 C 1.30520 * 109.67311 * 359.72325 * 17 16 15 19 19 H 0.96992 * 120.00538 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46750 * 60.00236 * 9 7 2 21 21 H 1.09004 * 109.47183 * 300.00954 * 9 7 2 22 22 H 1.09000 * 109.47124 * 60.00262 * 10 9 7 23 23 H 1.09004 * 109.47547 * 300.00527 * 10 9 7 24 24 H 1.00893 * 110.99726 * 303.95704 * 11 10 9 25 25 H 1.09000 * 109.47512 * 59.99863 * 12 11 10 26 26 H 1.09008 * 109.47405 * 300.00354 * 12 11 10 27 27 H 1.09000 * 109.46884 * 60.00395 * 13 12 11 28 28 H 1.09000 * 109.46955 * 299.99711 * 13 12 11 29 29 H 1.08002 * 126.34725 * 359.97438 * 15 14 13 30 30 H 1.07997 * 126.34949 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0019 14 7 2.5575 -8.5185 -0.0019 15 6 3.0666 -9.1550 -1.0842 16 7 3.8444 -10.1067 -0.6449 17 7 3.8434 -10.1074 0.6411 18 6 3.0697 -9.1525 1.0805 19 1 -0.4850 0.8399 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8722 -3.6043 -0.8905 24 1 0.8743 -4.9846 0.7799 25 1 3.0628 -6.0349 0.8899 26 1 3.0642 -6.0347 -0.8901 27 1 1.0085 -7.4207 -0.8926 28 1 1.0065 -7.4213 0.8875 29 1 2.8675 -8.9174 -2.1188 30 1 2.8736 -8.9125 2.1151 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381426367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = 71.470037 kcal Electronic energy + Delta-G solvation = -12927.436927 eV Core-core repulsion = 10565.994310 eV Total energy + Delta-G solvation = -2361.442617 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.19518 -37.02947 -34.89006 -32.98924 -30.68689 -30.44522 -27.79987 -24.47653 -22.92499 -22.40443 -21.78972 -20.70208 -17.57389 -16.46577 -16.23501 -15.75285 -15.22923 -14.83721 -14.55706 -13.96047 -13.69229 -13.42260 -12.36601 -12.19713 -11.77972 -11.61835 -11.17773 -11.00610 -10.67647 -10.52012 -10.36012 -10.15111 -9.55289 -9.52462 -9.26776 -8.45496 -8.17292 -6.09300 -4.12595 1.69147 2.32121 2.78738 3.26384 3.32938 3.35719 4.25484 4.32181 4.41639 4.46259 4.62650 4.83354 5.04819 5.17803 5.27118 5.30908 5.64994 5.74333 5.99755 6.11708 6.18355 6.68785 6.78677 7.15236 7.52612 7.61209 7.74823 7.93681 8.30951 8.58490 8.94235 9.52064 11.02065 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.090727 B = 0.004311 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.544619 B = 6493.393474 C = 6607.078708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.687 5.687 12 C 0.044 3.956 13 C 0.105 3.895 14 N -0.471 5.471 15 C 0.154 3.846 16 N -0.305 5.305 17 N -0.304 5.304 18 C 0.150 3.850 19 H 0.262 0.738 20 H 0.026 0.974 21 H 0.015 0.985 22 H 0.019 0.981 23 H 0.061 0.939 24 H 0.339 0.661 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.218 0.782 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -13.239 0.782 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.061 4.061 11 N -0.319 5.319 12 C -0.087 4.087 13 C -0.018 4.018 14 N -0.162 5.162 15 C -0.134 4.134 16 N -0.144 5.144 17 N -0.143 5.143 18 C -0.138 4.138 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.033 0.967 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.156 0.844 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.234 0.766 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.410 -14.282 0.099 14.485 hybrid contribution -0.194 2.232 0.930 2.425 sum 2.216 -12.051 1.029 12.296 Atomic orbital electron populations 1.69957 1.06061 1.26774 1.50371 1.24995 0.94856 0.99297 0.95109 0.86570 0.79793 0.83293 0.78206 1.20549 1.21141 1.19889 1.21143 0.93008 0.90927 1.51326 0.92719 1.19075 0.93957 0.90335 0.97852 1.22205 0.97094 0.87776 0.99022 1.60570 1.19486 1.01964 1.49867 1.22232 0.95071 0.89771 1.01629 1.22035 0.90813 0.82882 1.06044 1.46554 1.36290 1.26322 1.06995 1.26576 0.97523 0.93880 0.95417 1.74246 1.18149 1.18632 1.03382 1.74236 1.18195 1.18443 1.03458 1.26534 0.97859 0.94035 0.95361 0.92874 0.95523 0.96696 0.96283 0.92080 0.84368 0.94940 0.90502 0.87278 0.88402 0.76558 0.76746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.62 5.23 -27.89 -0.15 0.48 16 10 C 0.07 1.28 5.62 -3.82 -0.02 1.26 16 11 N -0.69 -10.19 6.50 -113.78 -0.74 -10.93 16 12 C 0.04 0.50 6.01 -3.83 -0.02 0.47 16 13 C 0.11 0.87 6.46 -4.04 -0.03 0.84 16 14 N -0.47 -4.55 2.75 -119.97 -0.33 -4.88 16 15 C 0.15 1.63 12.74 -89.95 -1.15 0.48 16 16 N -0.30 -4.30 12.21 29.69 0.36 -3.94 16 17 N -0.30 -4.29 12.21 29.69 0.36 -3.92 16 18 C 0.15 1.57 12.74 -89.94 -1.15 0.43 16 19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 20 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.34 4.64 8.73 -39.30 -0.34 4.30 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.22 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 267.23 15.07 4.03 4.03 Total: -1.00 -32.51 267.23 -7.63 -40.15 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.11 Total: -2.01 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.92 Total: -9.19 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.39 Total: -49.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.51 -7.63 -40.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381426367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.617 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds