Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99793 * 2 1 4 4 H 1.48504 * 109.47195 * 270.00313 * 3 2 1 5 5 H 1.48503 * 109.47235 * 30.00091 * 3 2 1 6 6 H 1.48504 * 109.47375 * 150.00652 * 3 2 1 7 7 C 1.37877 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47436 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00024 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47074 * 180.02562 * 12 11 10 14 14 N 1.46506 * 109.46992 * 179.97438 * 13 12 11 15 15 C 1.35488 * 126.98016 * 269.68450 * 14 13 12 16 16 N 1.30527 * 107.30683 * 179.84146 * 15 14 13 17 17 N 1.28598 * 109.67046 * 0.43713 * 16 15 14 18 18 C 1.30520 * 109.67311 * 359.72325 * 17 16 15 19 19 H 0.96992 * 120.00538 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46750 * 60.00236 * 9 7 2 21 21 H 1.09004 * 109.47183 * 300.00954 * 9 7 2 22 22 H 1.09000 * 109.47124 * 60.00262 * 10 9 7 23 23 H 1.09004 * 109.47547 * 300.00527 * 10 9 7 24 24 H 1.00893 * 110.99726 * 303.95704 * 11 10 9 25 25 H 1.09000 * 109.47512 * 59.99863 * 12 11 10 26 26 H 1.09008 * 109.47405 * 300.00354 * 12 11 10 27 27 H 1.09000 * 109.46884 * 60.00395 * 13 12 11 28 28 H 1.09000 * 109.46955 * 299.99711 * 13 12 11 29 29 H 1.08002 * 126.34725 * 359.97438 * 15 14 13 30 30 H 1.07997 * 126.34949 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0019 14 7 2.5575 -8.5185 -0.0019 15 6 3.0666 -9.1550 -1.0842 16 7 3.8444 -10.1067 -0.6449 17 7 3.8434 -10.1074 0.6411 18 6 3.0697 -9.1525 1.0805 19 1 -0.4850 0.8399 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 2.8720 -3.6043 0.8895 23 1 2.8722 -3.6043 -0.8905 24 1 0.8743 -4.9846 0.7799 25 1 3.0628 -6.0349 0.8899 26 1 3.0642 -6.0347 -0.8901 27 1 1.0085 -7.4207 -0.8926 28 1 1.0065 -7.4213 0.8875 29 1 2.8675 -8.9174 -2.1188 30 1 2.8736 -8.9125 2.1151 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381426367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = 50.753354 kcal Electronic energy + Delta-G solvation = -12928.335270 eV Core-core repulsion = 10565.994310 eV Total energy + Delta-G solvation = -2362.340960 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.02353 -38.14525 -36.10034 -34.81315 -31.96712 -31.53898 -29.12502 -26.12096 -24.04173 -23.24644 -22.73103 -22.29939 -18.57723 -18.26625 -17.29663 -16.74427 -16.50635 -16.09623 -15.60459 -15.13498 -14.94678 -14.75573 -14.09068 -13.46437 -13.24036 -12.83612 -12.59252 -12.51987 -12.41236 -11.92603 -11.53764 -11.34788 -11.34438 -11.03864 -10.56696 -10.43066 -9.42102 -8.21450 -6.32347 0.91833 1.41286 1.41686 1.52497 1.57357 1.92101 2.40183 3.12779 3.29733 3.64043 3.78170 3.88922 3.95253 4.34202 4.38088 4.41742 4.51547 4.60954 4.81985 4.97454 5.04980 5.23377 5.43001 5.65691 5.74774 5.95732 6.05237 6.21802 6.48101 6.85153 7.37269 7.73855 8.90401 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.090727 B = 0.004311 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.544619 B = 6493.393474 C = 6607.078708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.030 3.970 10 C 0.085 3.915 11 N -0.688 5.688 12 C 0.049 3.951 13 C 0.117 3.883 14 N -0.469 5.469 15 C 0.161 3.839 16 N -0.351 5.351 17 N -0.351 5.351 18 C 0.160 3.840 19 H 0.264 0.736 20 H -0.002 1.002 21 H -0.004 1.004 22 H 0.020 0.980 23 H 0.057 0.943 24 H 0.347 0.653 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.249 0.751 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -13.087 0.995 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.044 4.044 11 N -0.320 5.320 12 C -0.082 4.082 13 C -0.006 4.006 14 N -0.159 5.159 15 C -0.128 4.128 16 N -0.190 5.190 17 N -0.190 5.190 18 C -0.129 4.129 19 H 0.073 0.927 20 H 0.017 0.983 21 H 0.015 0.985 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.166 0.834 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.265 0.735 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.675 -14.161 0.314 14.414 hybrid contribution -0.308 2.167 0.863 2.353 sum 2.367 -11.994 1.177 12.282 Atomic orbital electron populations 1.70078 1.07689 1.27827 1.51362 1.25907 0.95728 1.03180 0.94649 0.85483 0.78667 0.78630 0.78476 1.19863 1.20728 1.18867 1.21620 0.93513 0.92419 1.50985 0.92337 1.18930 0.94328 0.92000 0.95481 1.21766 0.95607 0.88133 0.98897 1.60378 1.19868 1.01254 1.50522 1.22201 0.94783 0.89836 1.01340 1.21994 0.89976 0.80587 1.08006 1.46619 1.36339 1.26368 1.06592 1.27190 0.96027 0.92699 0.96857 1.74157 1.20241 1.20781 1.03810 1.74147 1.20358 1.20651 1.03828 1.27187 0.96215 0.92718 0.96824 0.92705 0.98347 0.98530 0.96148 0.92447 0.83441 0.94860 0.91189 0.85947 0.86015 0.73476 0.73393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.55 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.03 1.50 5.23 29.84 0.16 1.65 16 10 C 0.08 3.19 5.62 86.30 0.49 3.67 16 11 N -0.69 -19.15 6.50 -513.88 -3.34 -22.49 16 12 C 0.05 0.98 6.01 86.30 0.52 1.50 16 13 C 0.12 1.52 6.46 86.38 0.56 2.08 16 14 N -0.47 -7.81 2.75 -533.47 -1.47 -9.27 16 15 C 0.16 3.10 12.74 180.11 2.30 5.39 16 16 N -0.35 -9.71 12.21 -59.99 -0.73 -10.44 16 17 N -0.35 -9.65 12.21 -59.99 -0.73 -10.39 16 18 C 0.16 2.99 12.74 180.11 2.30 5.29 16 19 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 20 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 21 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 22 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.35 8.82 8.73 -89.70 -0.78 8.04 16 25 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.25 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.25 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -71.04 267.23 3.38 -67.65 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.34 Total: 4.04 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 7.00 Total: -9.51 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -5.99 Total: -107.16 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -71.04 3.38 -67.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381426367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.404 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds