Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30517 * 126.34552 * 2 1 4 4 N 1.28594 * 109.67080 * 180.02562 * 3 2 1 5 5 C 1.30524 * 109.67357 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.34514 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47041 * 90.02477 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99892 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00241 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 90.00125 * 13 11 9 15 15 H 1.48503 * 109.47215 * 210.00315 * 13 11 9 16 16 H 1.48508 * 109.46958 * 330.00276 * 13 11 9 17 17 N 1.35491 * 107.30684 * 0.22655 * 5 4 3 18 18 C 1.46498 * 126.97888 * 179.77317 * 17 5 4 19 19 H 1.09007 * 109.47189 * 89.97293 * 1 2 3 20 20 H 1.08999 * 109.47480 * 209.97338 * 1 2 3 21 21 H 1.09003 * 109.47122 * 329.97307 * 1 2 3 22 22 H 1.08997 * 109.46924 * 330.02389 * 6 5 4 23 23 H 1.08995 * 109.46962 * 210.02543 * 6 5 4 24 24 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 25 25 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 26 26 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 27 27 H 0.97002 * 119.99998 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.47119 * 90.00356 * 18 17 5 29 29 H 1.08999 * 109.47265 * 209.99888 * 18 17 5 30 30 H 1.08998 * 109.47198 * 330.00423 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5124 0.6823 -0.0005 5 6 3.5806 -0.6212 -0.0015 6 6 4.8396 -1.4496 -0.0029 7 7 5.2492 -1.7202 1.3816 8 6 6.4757 -2.5280 1.4195 9 6 6.8645 -2.7841 2.8527 10 1 6.2611 -2.3862 3.6553 11 6 7.9910 -3.5255 3.1394 12 7 8.3300 -3.7494 4.3902 13 14 9.0350 -4.2131 1.7513 14 1 10.0814 -3.2258 1.3831 15 1 9.6795 -5.4753 2.1950 16 1 8.1740 -4.4848 0.5722 17 7 2.3099 -1.0914 -0.0066 18 6 1.8896 -2.4947 -0.0141 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5134 21 1 -0.3633 0.8898 0.5143 22 1 5.6320 -0.9053 -0.5165 23 1 4.6536 -2.3922 -0.5176 24 1 4.5062 -2.1670 1.8978 25 1 6.3006 -3.4781 0.9147 26 1 7.2797 -1.9916 0.9155 27 1 9.1228 -4.2707 4.5919 28 1 1.7829 -2.8475 1.0118 29 1 0.9340 -2.5851 -0.5305 30 1 2.6392 -3.0958 -0.5288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393034400.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = 78.536658 kcal Electronic energy + Delta-G solvation = -13468.075873 eV Core-core repulsion = 11106.939687 eV Total energy + Delta-G solvation = -2361.136185 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.98346 -35.94270 -34.96188 -32.86318 -31.95254 -29.10219 -27.54624 -27.00142 -24.57016 -21.27350 -21.11754 -20.63138 -17.06528 -16.68052 -16.42132 -15.39782 -14.63798 -14.09739 -14.00330 -13.76541 -13.68702 -12.93668 -12.87312 -12.74442 -12.46500 -11.92994 -11.69570 -11.31889 -10.74564 -10.67594 -10.16467 -10.10363 -9.95033 -9.39189 -8.88172 -8.64918 -7.67628 -6.11393 -4.10709 1.86577 2.49587 3.03127 3.25037 3.32100 3.32439 4.31014 4.36131 4.44645 4.50663 4.83964 4.87745 5.07128 5.16583 5.19909 5.24091 5.28000 5.54679 5.73392 5.92845 6.04845 6.29630 6.61005 6.85903 6.91975 7.45763 7.72095 8.09472 8.55010 8.93353 8.96186 9.48940 11.01754 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058672 B = 0.006237 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.113621 B = 4487.911529 C = 4509.384083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.160 3.840 3 N -0.298 5.298 4 N -0.280 5.280 5 C 0.192 3.808 6 C 0.142 3.858 7 N -0.669 5.669 8 C 0.166 3.834 9 C -0.519 4.519 10 H 0.079 0.921 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.268 1.268 17 N -0.475 5.475 18 C 0.070 3.930 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.093 0.907 22 H 0.102 0.898 23 H 0.039 0.961 24 H 0.334 0.666 25 H -0.013 1.013 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 -0.278 -11.159 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.139 5.139 4 N -0.119 5.119 5 C -0.075 4.075 6 C 0.010 3.990 7 N -0.301 5.301 8 C 0.039 3.961 9 C -0.558 4.558 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.536 5.536 13 Si 0.706 3.294 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.193 1.193 17 N -0.167 5.167 18 C -0.073 4.073 19 H 0.100 0.900 20 H 0.094 0.906 21 H 0.112 0.888 22 H 0.120 0.880 23 H 0.056 0.944 24 H 0.151 0.849 25 H 0.004 0.996 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.061 1.656 -10.980 17.917 hybrid contribution -0.080 -2.706 -0.818 2.828 sum -14.141 -1.050 -11.798 18.446 Atomic orbital electron populations 1.20150 0.84072 1.04360 1.03559 1.24752 0.96888 0.83161 1.05898 1.74239 0.96740 1.24050 1.18839 1.74265 1.11462 1.08220 1.17988 1.24917 0.86447 0.92677 1.03492 1.20305 0.89637 0.95192 0.93854 1.60472 1.07922 1.53190 1.08488 1.20056 0.87564 0.89845 0.98672 1.20997 1.11003 1.32978 0.90778 0.90249 1.24894 0.97120 0.95715 0.95461 1.69895 1.26072 1.40008 1.17659 0.86817 0.81024 0.78883 0.82721 1.19938 1.21154 1.19299 1.46030 1.06913 1.08634 1.55171 1.22114 1.02457 0.78244 1.04511 0.90011 0.90645 0.88814 0.87955 0.94351 0.84850 0.99551 0.95360 0.92521 0.89638 0.89178 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.05 36.01 0.36 -0.14 16 2 C 0.16 2.21 8.03 -154.99 -1.24 0.97 16 3 N -0.30 -5.38 12.21 32.80 0.40 -4.98 16 4 N -0.28 -5.52 12.21 32.80 0.40 -5.12 16 5 C 0.19 3.26 7.54 -154.98 -1.17 2.09 16 6 C 0.14 2.39 6.04 -4.97 -0.03 2.36 16 7 N -0.67 -13.81 6.48 -116.34 -0.75 -14.57 16 8 C 0.17 3.91 4.51 -4.97 -0.02 3.88 16 9 C -0.52 -14.69 9.87 -34.44 -0.34 -15.03 16 10 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 13 Si 0.88 21.05 27.47 -169.99 -4.67 16.39 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.08 6.54 56.52 0.37 -5.72 16 17 N -0.48 -6.37 3.15 -118.00 -0.37 -6.75 16 18 C 0.07 0.59 10.71 59.85 0.64 1.23 16 19 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 21 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 23 H 0.04 0.55 7.21 -51.93 -0.37 0.18 16 24 H 0.33 6.61 8.71 -39.29 -0.34 6.26 16 25 H -0.01 -0.30 7.20 -51.93 -0.37 -0.67 16 26 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.48 7.82 -51.93 -0.41 0.08 16 30 H 0.09 0.72 7.19 -51.93 -0.37 0.34 16 LS Contribution 260.98 15.07 3.93 3.93 Total: -1.00 -34.76 260.98 -6.14 -40.90 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.95 Total: -0.49 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.90 Total: -2.73 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.45 Total: -58.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.76 -6.14 -40.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393034400.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.438 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds