Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30517 * 126.34552 * 2 1 4 4 N 1.28594 * 109.67080 * 180.02562 * 3 2 1 5 5 C 1.30524 * 109.67357 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.34514 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47041 * 90.02477 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99892 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00241 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 90.00125 * 13 11 9 15 15 H 1.48503 * 109.47215 * 210.00315 * 13 11 9 16 16 H 1.48508 * 109.46958 * 330.00276 * 13 11 9 17 17 N 1.35491 * 107.30684 * 0.22655 * 5 4 3 18 18 C 1.46498 * 126.97888 * 179.77317 * 17 5 4 19 19 H 1.09007 * 109.47189 * 89.97293 * 1 2 3 20 20 H 1.08999 * 109.47480 * 209.97338 * 1 2 3 21 21 H 1.09003 * 109.47122 * 329.97307 * 1 2 3 22 22 H 1.08997 * 109.46924 * 330.02389 * 6 5 4 23 23 H 1.08995 * 109.46962 * 210.02543 * 6 5 4 24 24 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 25 25 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 26 26 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 27 27 H 0.97002 * 119.99998 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.47119 * 90.00356 * 18 17 5 29 29 H 1.08999 * 109.47265 * 209.99888 * 18 17 5 30 30 H 1.08998 * 109.47198 * 330.00423 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5124 0.6823 -0.0005 5 6 3.5806 -0.6212 -0.0015 6 6 4.8396 -1.4496 -0.0029 7 7 5.2492 -1.7202 1.3816 8 6 6.4757 -2.5280 1.4195 9 6 6.8645 -2.7841 2.8527 10 1 6.2611 -2.3862 3.6553 11 6 7.9910 -3.5255 3.1394 12 7 8.3300 -3.7494 4.3902 13 14 9.0350 -4.2131 1.7513 14 1 10.0814 -3.2258 1.3831 15 1 9.6795 -5.4753 2.1950 16 1 8.1740 -4.4848 0.5722 17 7 2.3099 -1.0914 -0.0066 18 6 1.8896 -2.4947 -0.0141 19 1 -0.3634 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5134 21 1 -0.3633 0.8898 0.5143 22 1 5.6320 -0.9053 -0.5165 23 1 4.6536 -2.3922 -0.5176 24 1 4.5062 -2.1670 1.8978 25 1 6.3006 -3.4781 0.9147 26 1 7.2797 -1.9916 0.9155 27 1 9.1228 -4.2707 4.5919 28 1 1.7829 -2.8475 1.0118 29 1 0.9340 -2.5851 -0.5305 30 1 2.6392 -3.0958 -0.5288 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393034400.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = 52.257188 kcal Electronic energy + Delta-G solvation = -13469.215436 eV Core-core repulsion = 11106.939687 eV Total energy + Delta-G solvation = -2362.275749 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.12850 -37.51035 -36.03834 -34.73224 -33.28808 -30.51973 -28.65180 -28.13775 -26.11336 -23.19152 -22.21890 -21.75345 -19.04420 -17.78251 -17.53048 -17.02788 -16.13473 -15.53932 -15.36708 -15.15383 -14.53038 -14.39738 -13.81350 -13.70774 -13.48491 -13.29942 -13.19588 -12.70342 -12.49572 -12.44769 -11.85987 -11.56515 -11.31230 -11.10615 -10.81401 -10.10263 -9.26705 -8.30252 -6.36431 0.76268 1.37863 1.40406 1.50161 1.54273 1.80321 2.34976 3.04228 3.20380 3.49320 3.62541 3.78453 3.89955 4.23217 4.33729 4.49710 4.61509 4.69875 4.72110 4.84805 4.96649 5.00899 5.02571 5.21719 5.48425 5.82186 5.96307 6.43715 6.52667 6.71442 7.28400 7.73911 8.86695 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058672 B = 0.006237 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.113621 B = 4487.911529 C = 4509.384083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.175 3.825 3 N -0.350 5.350 4 N -0.329 5.329 5 C 0.178 3.822 6 C 0.149 3.851 7 N -0.687 5.687 8 C 0.178 3.822 9 C -0.533 4.533 10 H 0.032 0.968 11 C 0.008 3.992 12 N -0.949 5.949 13 Si 0.955 3.045 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.240 1.240 17 N -0.470 5.470 18 C 0.058 3.942 19 H 0.106 0.894 20 H 0.105 0.895 21 H 0.095 0.905 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.337 0.663 25 H 0.005 0.995 26 H 0.029 0.971 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.282 -1.824 -13.465 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.093 4.093 3 N -0.190 5.190 4 N -0.169 5.169 5 C -0.091 4.091 6 C 0.018 3.982 7 N -0.319 5.319 8 C 0.050 3.950 9 C -0.571 4.571 10 H 0.050 0.950 11 C -0.190 4.190 12 N -0.589 5.589 13 Si 0.778 3.222 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.163 1.163 17 N -0.161 5.161 18 C -0.082 4.082 19 H 0.125 0.875 20 H 0.124 0.876 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.091 0.909 24 H 0.154 0.846 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.146 0.854 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.405 0.106 -13.301 20.353 hybrid contribution 0.175 -2.193 -0.025 2.200 sum -15.230 -2.088 -13.326 20.344 Atomic orbital electron populations 1.20456 0.79975 1.05966 1.05617 1.25747 0.98836 0.82316 1.02406 1.74127 0.96790 1.26371 1.21733 1.74129 1.12979 1.10124 1.19638 1.24785 0.87842 0.92179 1.04288 1.20244 0.89724 0.96590 0.91667 1.60278 1.07405 1.52847 1.11365 1.19792 0.88858 0.90984 0.95383 1.21291 1.10735 1.32721 0.92341 0.95009 1.25922 0.98606 0.96002 0.98434 1.70063 1.27047 1.41309 1.20502 0.85608 0.79077 0.77969 0.79594 1.19428 1.20729 1.16305 1.46264 1.05547 1.10441 1.53890 1.22554 1.04578 0.75418 1.05698 0.87529 0.87640 0.88595 0.88477 0.90867 0.84567 0.97701 0.95259 0.92284 0.89001 0.85394 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.05 71.24 0.72 -0.07 16 2 C 0.18 4.51 8.03 137.98 1.11 5.62 16 3 N -0.35 -12.64 12.21 -50.16 -0.61 -13.25 16 4 N -0.33 -13.15 12.21 -50.15 -0.61 -13.76 16 5 C 0.18 5.90 7.54 137.98 1.04 6.94 16 6 C 0.15 4.78 6.04 85.56 0.52 5.30 16 7 N -0.69 -27.95 6.48 -521.97 -3.38 -31.34 16 8 C 0.18 8.15 4.51 85.56 0.39 8.53 16 9 C -0.53 -30.63 9.87 25.60 0.25 -30.38 16 10 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 11 C 0.01 0.46 5.47 84.65 0.46 0.92 16 12 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 13 Si 0.96 42.61 27.47 68.60 1.88 44.50 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 17 N -0.47 -11.55 3.15 -527.25 -1.66 -13.21 16 18 C 0.06 0.76 10.71 127.77 1.37 2.13 16 19 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 20 H 0.11 0.75 7.87 -2.39 -0.02 0.73 16 21 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 23 H 0.07 1.85 7.21 -2.39 -0.02 1.83 16 24 H 0.34 13.21 8.71 -89.69 -0.78 12.43 16 25 H 0.01 0.23 7.20 -2.38 -0.02 0.21 16 26 H 0.03 1.34 7.57 -2.39 -0.02 1.33 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.13 0.71 7.82 -2.39 -0.02 0.69 16 30 H 0.10 1.17 7.19 -2.39 -0.02 1.15 16 Total: -1.00 -78.99 260.98 2.07 -76.91 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.30 Total: 10.00 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.85 Total: -1.01 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.97 Total: -130.41 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Total: -78.99 2.07 -76.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393034400.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.172 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds