Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47023 * 2 1 4 4 N 1.46503 * 109.46909 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00273 * 274.74839 * 4 3 2 6 6 H 1.08004 * 119.99772 * 37.09923 * 5 4 3 7 7 C 1.38813 * 120.00239 * 217.10658 * 5 4 3 8 8 N 1.31623 * 119.99890 * 22.79164 * 7 5 4 9 9 Si 1.86804 * 120.00062 * 202.79291 * 7 5 4 10 10 H 1.48496 * 109.47095 * 59.99792 * 9 7 5 11 11 H 1.48500 * 109.46913 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46998 * 299.99795 * 9 7 5 13 13 C 1.46497 * 119.99778 * 94.74984 * 4 3 2 14 14 C 1.50698 * 109.47167 * 269.99492 * 13 4 3 15 15 C 1.34329 * 126.16277 * 94.98272 * 14 13 4 16 16 O 1.34752 * 107.11325 * 179.81193 * 15 14 13 17 17 C 1.33964 * 107.75514 * 0.36308 * 16 15 14 18 18 N 1.30251 * 108.76060 * 359.63141 * 17 16 15 19 19 H 1.08999 * 109.47190 * 300.00155 * 1 2 3 20 20 H 1.09001 * 109.47118 * 60.00071 * 1 2 3 21 21 H 1.08995 * 109.47005 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47190 * 239.99845 * 2 1 3 23 23 H 1.09001 * 109.47118 * 119.99929 * 2 1 3 24 24 H 1.08999 * 109.47264 * 59.99890 * 3 2 1 25 25 H 1.09001 * 109.47115 * 299.99930 * 3 2 1 26 26 H 0.96999 * 119.99599 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.47411 * 149.99893 * 13 4 3 28 28 H 1.09000 * 109.47590 * 30.00111 * 13 4 3 29 29 H 1.08003 * 126.44549 * 0.05941 * 15 14 13 30 30 H 1.08004 * 125.61740 * 179.89613 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3445 1.1827 6 1 3.8128 0.7128 1.9737 7 6 5.3665 2.0572 1.3644 8 7 5.6021 3.1334 0.6442 9 14 6.6164 1.4888 2.6311 10 1 7.0755 0.1178 2.2928 11 1 7.7781 2.4139 2.6297 12 1 5.9892 1.4828 3.9772 13 6 4.2380 1.5474 -1.2635 14 6 4.4894 0.1674 -1.8143 15 6 3.7307 -0.4763 -2.7168 16 8 4.3069 -1.6743 -2.9370 17 6 5.3991 -1.7504 -2.1651 18 7 5.5133 -0.6421 -1.4904 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 6.4246 3.6316 0.7715 27 1 5.1904 2.0487 -1.0908 28 1 3.6492 2.1222 -1.9783 29 1 2.8305 -0.1021 -3.1818 30 1 6.0761 -2.5904 -2.1141 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393716737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = 37.342005 kcal Electronic energy + Delta-G solvation = -14184.153969 eV Core-core repulsion = 11788.938699 eV Total energy + Delta-G solvation = -2395.215271 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.52731 -36.29799 -33.99913 -32.81578 -30.91446 -29.53222 -26.00252 -25.44829 -22.27096 -21.95168 -20.50388 -19.96660 -17.09390 -16.41237 -15.73853 -14.85821 -14.57838 -14.25034 -13.82544 -13.39824 -13.05955 -12.76736 -12.21297 -11.52944 -11.26827 -11.00729 -10.65880 -10.63556 -10.57219 -10.25692 -10.09359 -9.97183 -9.72208 -9.59654 -8.39382 -8.10839 -6.57253 -5.75245 -3.30245 2.17698 3.44254 3.50611 3.52717 3.56018 3.57980 4.58165 4.87559 5.38976 5.54374 5.65931 5.73899 5.75267 5.90846 6.10323 6.25435 6.33417 6.43996 6.56045 6.59678 6.61799 6.79662 6.96760 7.11175 7.21966 7.60625 7.88623 8.49975 8.62328 9.21854 9.86116 10.41600 11.26899 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.014026 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.266122 B = 1995.856903 C = 2743.068341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.572 5.572 5 C -0.257 4.257 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.209 3.791 14 C 0.013 3.987 15 C -0.111 4.111 16 O -0.222 6.222 17 C 0.138 3.862 18 N -0.460 5.460 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.255 0.745 27 H 0.109 0.891 28 H 0.044 0.956 29 H 0.202 0.798 30 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -6.258 -5.808 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.291 5.291 5 C -0.386 4.386 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.081 3.919 14 C -0.110 4.110 15 C -0.182 4.182 16 O -0.109 6.109 17 C -0.088 4.088 18 N -0.190 5.190 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.127 0.873 28 H 0.062 0.938 29 H 0.218 0.782 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.077 -5.984 -5.381 9.021 hybrid contribution 0.192 -0.732 0.168 0.775 sum -3.885 -6.715 -5.213 9.347 Atomic orbital electron populations 1.21723 0.97355 1.00293 1.01040 1.22158 0.93673 1.01203 1.01482 1.20940 0.85115 0.92829 0.98965 1.43672 0.99239 1.84334 1.01870 1.18824 1.05671 1.21089 0.93062 0.92617 1.25059 1.00408 0.94302 0.98012 1.69983 1.25479 1.14578 1.42777 0.86466 0.81182 0.78687 0.81004 1.20556 1.21708 1.20978 1.19456 1.00708 0.85737 0.85967 1.23629 0.90631 1.01573 0.95181 1.24656 1.02514 0.84875 1.06114 1.84358 1.35478 1.35733 1.55330 1.28006 0.89329 0.99874 0.91627 1.70481 1.24364 1.01893 1.22222 0.93174 0.93434 0.93947 0.93066 0.92647 0.93446 0.94750 0.93483 0.87321 0.93801 0.78170 0.74691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.70 6.24 -26.73 -0.17 -2.86 16 3 C 0.15 3.10 5.72 -4.04 -0.02 3.08 16 4 N -0.57 -14.32 2.42 -174.61 -0.42 -14.74 16 5 C -0.26 -7.18 9.45 -15.06 -0.14 -7.32 16 6 H 0.06 1.58 7.93 -52.48 -0.42 1.17 16 7 C 0.02 0.64 4.92 -17.43 -0.09 0.56 16 8 N -0.89 -25.80 11.53 55.49 0.64 -25.16 16 9 Si 0.90 22.55 29.61 -169.99 -5.03 17.51 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.21 4.98 5.88 -5.20 -0.03 4.95 16 14 C 0.01 0.27 6.57 -82.81 -0.54 -0.27 16 15 C -0.11 -2.00 10.78 29.35 0.32 -1.68 16 16 O -0.22 -3.84 10.78 5.37 0.06 -3.78 16 17 C 0.14 2.38 13.23 52.09 0.69 3.07 16 18 N -0.46 -10.20 11.29 -11.18 -0.13 -10.32 16 19 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.96 6.65 -51.93 -0.35 0.62 16 23 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 25 H 0.03 0.66 7.84 -51.93 -0.41 0.25 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.11 2.99 5.54 -51.93 -0.29 2.70 16 28 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 29 H 0.20 2.91 8.06 -52.48 -0.42 2.49 16 30 H 0.24 2.77 8.06 -52.48 -0.42 2.34 16 LS Contribution 260.54 15.07 3.93 3.93 Total: -1.00 -31.55 260.54 -4.53 -36.09 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.96 Total: -1.25 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 0.38 Total: -2.27 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.09 Total: -50.22 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.06 Total: -3.78 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.55 -4.53 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393716737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.427 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds