Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47023 * 2 1 4 4 N 1.46503 * 109.46909 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00273 * 274.74839 * 4 3 2 6 6 H 1.08004 * 119.99772 * 37.09923 * 5 4 3 7 7 C 1.38813 * 120.00239 * 217.10658 * 5 4 3 8 8 N 1.31623 * 119.99890 * 22.79164 * 7 5 4 9 9 Si 1.86804 * 120.00062 * 202.79291 * 7 5 4 10 10 H 1.48496 * 109.47095 * 59.99792 * 9 7 5 11 11 H 1.48500 * 109.46913 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46998 * 299.99795 * 9 7 5 13 13 C 1.46497 * 119.99778 * 94.74984 * 4 3 2 14 14 C 1.50698 * 109.47167 * 269.99492 * 13 4 3 15 15 C 1.34329 * 126.16277 * 94.98272 * 14 13 4 16 16 O 1.34752 * 107.11325 * 179.81193 * 15 14 13 17 17 C 1.33964 * 107.75514 * 0.36308 * 16 15 14 18 18 N 1.30251 * 108.76060 * 359.63141 * 17 16 15 19 19 H 1.08999 * 109.47190 * 300.00155 * 1 2 3 20 20 H 1.09001 * 109.47118 * 60.00071 * 1 2 3 21 21 H 1.08995 * 109.47005 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47190 * 239.99845 * 2 1 3 23 23 H 1.09001 * 109.47118 * 119.99929 * 2 1 3 24 24 H 1.08999 * 109.47264 * 59.99890 * 3 2 1 25 25 H 1.09001 * 109.47115 * 299.99930 * 3 2 1 26 26 H 0.96999 * 119.99599 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.47411 * 149.99893 * 13 4 3 28 28 H 1.09000 * 109.47590 * 30.00111 * 13 4 3 29 29 H 1.08003 * 126.44549 * 0.05941 * 15 14 13 30 30 H 1.08004 * 125.61740 * 179.89613 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3445 1.1827 6 1 3.8128 0.7128 1.9737 7 6 5.3665 2.0572 1.3644 8 7 5.6021 3.1334 0.6442 9 14 6.6164 1.4888 2.6311 10 1 7.0755 0.1178 2.2928 11 1 7.7781 2.4139 2.6297 12 1 5.9892 1.4828 3.9772 13 6 4.2380 1.5474 -1.2635 14 6 4.4894 0.1674 -1.8143 15 6 3.7307 -0.4763 -2.7168 16 8 4.3069 -1.6743 -2.9370 17 6 5.3991 -1.7504 -2.1651 18 7 5.5133 -0.6421 -1.4904 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 6.4246 3.6316 0.7715 27 1 5.1904 2.0487 -1.0908 28 1 3.6492 2.1222 -1.9783 29 1 2.8305 -0.1021 -3.1818 30 1 6.0761 -2.5904 -2.1141 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393716737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = 14.943614 kcal Electronic energy + Delta-G solvation = -14185.125237 eV Core-core repulsion = 11788.938699 eV Total energy + Delta-G solvation = -2396.186538 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.97118 -38.08118 -35.50024 -34.56927 -32.73093 -31.13652 -27.62289 -27.31670 -23.96082 -23.35718 -22.01649 -21.68859 -18.86366 -18.02769 -17.21868 -16.85159 -16.04622 -15.79897 -15.61534 -14.94491 -14.79894 -14.34643 -13.66980 -13.30466 -13.01978 -12.67683 -12.53237 -12.44962 -12.17911 -11.93356 -11.89027 -11.79784 -11.34909 -11.16725 -10.47882 -9.59089 -8.58467 -7.84142 -5.43235 0.78764 1.41681 1.47616 1.53773 2.01561 2.21021 2.52960 3.26512 3.60055 3.82372 4.24855 4.28523 4.33685 4.48540 4.67075 4.80588 4.84505 4.97018 5.11067 5.14093 5.24037 5.25993 5.43402 5.60553 5.64008 5.68087 5.70785 6.46741 7.10632 7.17947 7.87039 8.37130 9.12788 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.014026 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.266122 B = 1995.856903 C = 2743.068341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.145 3.855 4 N -0.589 5.589 5 C -0.261 4.261 6 H 0.042 0.958 7 C -0.022 4.022 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.274 1.274 13 C 0.214 3.786 14 C -0.026 4.026 15 C -0.084 4.084 16 O -0.214 6.214 17 C 0.160 3.840 18 N -0.522 5.522 19 H 0.051 0.949 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.026 0.974 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.252 0.748 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.237 0.763 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -7.800 -6.856 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.309 5.309 5 C -0.391 4.391 6 H 0.060 0.940 7 C -0.220 4.220 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.200 1.200 13 C 0.087 3.913 14 C -0.147 4.147 15 C -0.154 4.154 16 O -0.101 6.101 17 C -0.066 4.066 18 N -0.252 5.252 19 H 0.070 0.930 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.253 0.747 30 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -5.217 -7.530 -6.430 11.192 hybrid contribution 0.513 -0.313 0.423 0.734 sum -4.705 -7.843 -6.008 10.943 Atomic orbital electron populations 1.21653 0.94045 1.01757 1.02121 1.21961 0.96407 0.98735 1.00059 1.21072 0.83090 0.94633 0.99229 1.43859 1.00775 1.84768 1.01468 1.18909 1.06161 1.20111 0.93925 0.93999 1.25628 1.01856 0.94585 0.99934 1.70085 1.25606 1.15548 1.44334 0.85658 0.79399 0.77600 0.79690 1.21365 1.21551 1.19978 1.19166 0.98841 0.87369 0.85961 1.23205 0.92517 1.01196 0.97788 1.25067 1.02216 0.84179 1.03971 1.84409 1.35430 1.35172 1.55070 1.28964 0.88907 0.99473 0.89290 1.70383 1.25917 1.04018 1.24880 0.92973 0.91525 0.92289 0.93053 0.95461 0.94923 0.92626 0.93934 0.91510 0.92168 0.74673 0.69923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.13 -4.69 6.24 30.59 0.19 -4.50 16 3 C 0.14 5.99 5.72 86.38 0.49 6.48 16 4 N -0.59 -29.73 2.42 -706.33 -1.71 -31.43 16 5 C -0.26 -14.89 9.45 84.03 0.79 -14.09 16 6 H 0.04 2.46 7.93 -2.91 -0.02 2.43 16 7 C -0.02 -1.28 4.92 84.86 0.42 -0.86 16 8 N -0.91 -54.64 11.53 21.65 0.25 -54.39 16 9 Si 0.95 47.31 29.61 68.60 2.03 49.34 16 10 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.21 10.28 5.88 85.63 0.50 10.78 16 14 C -0.03 -1.10 6.57 41.26 0.27 -0.83 16 15 C -0.08 -2.77 10.78 66.93 0.72 -2.05 16 16 O -0.21 -6.66 10.78 -3.70 -0.04 -6.70 16 17 C 0.16 5.07 13.23 130.48 1.73 6.80 16 18 N -0.52 -22.74 11.29 -304.08 -3.43 -26.18 16 19 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.05 1.81 6.65 -2.39 -0.02 1.79 16 23 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.03 1.41 8.08 -2.39 -0.02 1.40 16 25 H 0.06 2.04 7.84 -2.39 -0.02 2.02 16 26 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.07 3.81 5.54 -2.38 -0.01 3.79 16 28 H 0.06 2.57 7.86 -2.39 -0.02 2.55 16 29 H 0.24 5.84 8.06 -2.91 -0.02 5.82 16 30 H 0.29 5.51 8.06 -2.91 -0.02 5.49 16 Total: -1.00 -69.94 260.54 4.05 -65.89 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.12 Total: 4.69 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.83 Total: -1.21 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.89 Total: -112.00 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.04 Total: -6.70 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -69.94 4.05 -65.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393716737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.832 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds