Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99834 * 2 1 4 4 H 1.48494 * 109.46807 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46927 * 299.99815 * 3 2 1 6 6 H 1.48490 * 109.47060 * 60.00095 * 3 2 1 7 7 C 1.37872 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00078 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99767 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46997 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47210 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46992 * 179.97438 * 13 12 11 15 15 C 1.35488 * 126.98016 * 269.68450 * 14 13 12 16 16 N 1.30527 * 107.30683 * 179.84146 * 15 14 13 17 17 N 1.28598 * 109.67046 * 0.43713 * 16 15 14 18 18 C 1.30520 * 109.67311 * 359.72325 * 17 16 15 19 19 H 0.97001 * 120.00018 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46463 * 60.00697 * 9 7 2 21 21 H 1.08992 * 109.47503 * 300.00431 * 9 7 2 22 22 H 1.00896 * 110.99852 * 303.95671 * 10 9 7 23 23 H 1.08997 * 109.47661 * 60.00082 * 11 10 9 24 24 H 1.09000 * 109.46973 * 299.99717 * 11 10 9 25 25 H 1.09000 * 109.47531 * 59.99474 * 12 11 10 26 26 H 1.09008 * 109.47250 * 300.00049 * 12 11 10 27 27 H 1.09000 * 109.46884 * 60.00289 * 13 12 11 28 28 H 1.09000 * 109.46955 * 299.99604 * 13 12 11 29 29 H 1.08002 * 126.34725 * 359.97438 * 15 14 13 30 30 H 1.07997 * 126.34949 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5303 -6.0430 -0.0005 13 6 1.8009 -7.3880 -0.0005 14 7 2.7823 -8.4757 -0.0005 15 6 3.3239 -9.0848 -1.0828 16 7 4.1516 -9.9934 -0.6434 17 7 4.1516 -9.9934 0.6426 18 6 3.3283 -9.0808 1.0820 19 1 -0.4850 0.8401 0.0004 20 1 0.6242 -2.5566 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 2.8406 -3.5486 -0.7818 23 1 0.8808 -4.9813 -0.8913 24 1 0.8802 -4.9817 0.8886 25 1 3.1546 -5.9686 0.8899 26 1 3.1559 -5.9685 -0.8901 27 1 1.1764 -7.4626 -0.8907 28 1 1.1757 -7.4622 0.8893 29 1 3.1118 -8.8588 -2.1174 30 1 3.1204 -8.8510 2.1165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394435659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = 49.363899 kcal Electronic energy + Delta-G solvation = -12925.685094 eV Core-core repulsion = 10563.283882 eV Total energy + Delta-G solvation = -2362.401211 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.99354 -37.98432 -36.28016 -34.63038 -32.21331 -31.51349 -28.79688 -26.21189 -23.75451 -23.21927 -22.93890 -22.29116 -18.63896 -18.23371 -17.02164 -16.82572 -16.53998 -16.04886 -15.62526 -15.10812 -15.07158 -14.52861 -13.78595 -13.52295 -13.24049 -12.77614 -12.64547 -12.61883 -12.27147 -12.02141 -11.83875 -11.34742 -11.31680 -11.03161 -10.67626 -10.40608 -9.13369 -8.24367 -6.35069 0.95332 1.41021 1.42128 1.55333 1.64821 1.94457 2.39403 3.09647 3.46788 3.66436 3.80367 3.86668 4.15107 4.20923 4.32654 4.44530 4.53660 4.71232 4.83577 5.04808 5.10982 5.19454 5.28144 5.29512 5.60841 5.99734 6.02417 6.42563 6.72018 6.87844 7.36367 7.76415 8.87169 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.086477 B = 0.004335 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.706425 B = 6457.439528 C = 6586.240856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.695 5.695 11 C 0.062 3.938 12 C -0.117 4.117 13 C 0.113 3.887 14 N -0.469 5.469 15 C 0.159 3.841 16 N -0.353 5.353 17 N -0.353 5.353 18 C 0.159 3.841 19 H 0.265 0.735 20 H -0.035 1.035 21 H 0.003 0.997 22 H 0.335 0.665 23 H 0.030 0.970 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.250 0.750 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -13.162 -0.959 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.326 5.326 11 C -0.069 4.069 12 C -0.155 4.155 13 C -0.009 4.009 14 N -0.159 5.159 15 C -0.130 4.130 16 N -0.192 5.192 17 N -0.192 5.192 18 C -0.130 4.130 19 H 0.074 0.926 20 H -0.017 1.017 21 H 0.021 0.979 22 H 0.152 0.848 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.266 0.734 30 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.290 -14.165 -0.269 14.351 hybrid contribution -1.114 2.030 -0.857 2.469 sum 1.175 -12.135 -1.126 12.244 Atomic orbital electron populations 1.70079 1.07697 1.27970 1.51562 1.25911 0.95772 1.03280 0.94597 0.85317 0.78920 0.78494 0.77773 1.18813 1.20298 1.20418 1.21602 0.93809 0.91644 1.50544 0.91922 1.19217 0.90624 0.88771 0.93505 1.60517 1.20681 1.01918 1.49455 1.21844 0.95668 0.88758 1.00583 1.21759 0.98252 0.92154 1.03386 1.22115 0.88888 0.82178 1.07744 1.46710 1.34009 1.28695 1.06472 1.27174 0.95337 0.93626 0.96864 1.74140 1.20269 1.20938 1.03827 1.74141 1.20416 1.20770 1.03840 1.27169 0.95380 0.93524 0.96886 0.92580 1.01727 0.97891 0.84844 0.95174 0.91356 0.91289 0.91439 0.86066 0.86080 0.73412 0.73517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 2 C 0.00 0.15 5.46 84.65 0.46 0.62 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.54 -29.75 9.32 25.60 0.24 -29.51 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.21 10.47 5.44 85.56 0.47 10.93 16 10 N -0.70 -27.03 6.49 -517.94 -3.36 -30.39 16 11 C 0.06 1.69 5.68 86.30 0.49 2.18 16 12 C -0.12 -2.23 5.80 30.59 0.18 -2.05 16 13 C 0.11 1.37 6.20 86.38 0.54 1.90 16 14 N -0.47 -7.79 2.75 -533.47 -1.47 -9.26 16 15 C 0.16 3.02 12.74 180.11 2.30 5.31 16 16 N -0.35 -9.82 12.21 -59.99 -0.73 -10.56 16 17 N -0.35 -9.87 12.21 -59.99 -0.73 -10.61 16 18 C 0.16 3.09 12.74 180.11 2.30 5.38 16 19 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 20 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 21 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 22 H 0.33 12.38 8.72 -89.70 -0.78 11.60 16 23 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.25 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.25 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -72.23 267.29 3.32 -68.91 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.34 Total: 6.40 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.96 Total: -5.24 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -6.01 Total: -115.27 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.23 3.32 -68.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394435659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.273 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds