Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47338 * 2 1 4 4 C 1.53006 * 109.46876 * 65.00147 * 3 2 1 5 5 C 1.52999 * 109.46955 * 185.00107 * 4 3 2 6 6 C 1.50703 * 109.47273 * 184.99903 * 3 2 1 7 7 N 1.30454 * 126.07267 * 300.02954 * 6 3 2 8 8 O 1.21279 * 110.68025 * 179.73549 * 7 6 3 9 9 C 1.34744 * 109.54007 * 359.97438 * 8 7 6 10 10 C 1.40336 * 126.79741 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00179 * 179.97438 * 10 9 8 12 12 C 1.40462 * 120.00042 * 359.97438 * 10 9 8 13 13 N 1.30507 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46964 * 90.00505 * 14 12 10 16 16 H 1.48504 * 109.47065 * 210.00143 * 14 12 10 17 17 H 1.48498 * 109.47213 * 330.00132 * 14 12 10 18 18 N 1.33333 * 106.40947 * 0.02562 * 9 8 7 19 19 H 1.09008 * 109.46820 * 59.99783 * 1 2 3 20 20 H 1.08993 * 109.47317 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47262 * 300.00040 * 1 2 3 22 22 H 1.09000 * 109.46887 * 240.00344 * 2 1 3 23 23 H 1.08995 * 109.47135 * 120.00199 * 2 1 3 24 24 H 1.09001 * 109.47324 * 305.00261 * 3 2 1 25 25 H 1.08996 * 109.47195 * 304.99712 * 4 3 2 26 26 H 1.08994 * 109.46802 * 65.00063 * 4 3 2 27 27 H 1.08996 * 109.47653 * 59.99847 * 5 4 3 28 28 H 1.08997 * 109.47360 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46977 * 300.00072 * 5 4 3 30 30 H 0.97000 * 119.99788 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0354 3.6023 1.2560 6 6 3.5420 1.4442 -0.1238 7 7 4.3819 0.8912 0.7072 8 8 5.5243 1.0572 0.3354 9 6 5.5264 1.7595 -0.8145 10 6 6.6504 2.1534 -1.5568 11 1 6.5244 2.7170 -2.4695 12 6 7.9392 1.8147 -1.1128 13 7 8.0914 1.1332 -0.0103 14 14 9.4352 2.3385 -2.1012 15 1 9.8947 3.6713 -1.6349 16 1 10.5242 1.3462 -1.9143 17 1 9.0761 2.4141 -3.5402 18 7 4.2494 2.0071 -1.1071 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6054 1.9815 -0.8418 25 1 0.5564 2.0470 1.4402 26 1 2.1408 1.6418 2.1426 27 1 1.5300 4.0870 0.4208 28 1 1.7475 4.0895 2.1875 29 1 3.1144 3.6818 1.1232 30 1 8.9814 0.8990 0.2961 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395195820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = 18.919866 kcal Electronic energy + Delta-G solvation = -13921.649603 eV Core-core repulsion = 11525.635489 eV Total energy + Delta-G solvation = -2396.014115 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.94959 -36.73864 -34.06127 -32.98899 -31.36897 -30.18338 -26.72198 -26.17824 -22.45948 -21.68992 -21.53906 -19.49949 -17.31360 -15.76523 -15.42687 -15.25110 -14.30161 -14.08411 -13.72418 -13.36372 -12.99712 -12.11034 -11.87649 -11.63123 -11.54682 -11.44575 -11.28742 -10.90868 -10.63816 -10.46059 -10.37847 -10.09992 -9.88604 -9.86179 -9.35884 -8.81739 -8.16905 -7.04655 -4.97053 2.81840 2.97672 3.03616 3.35210 3.76021 3.98592 4.98651 5.05440 5.14878 5.39750 5.48840 5.58817 5.66736 5.72272 5.87468 6.02327 6.12305 6.19481 6.20566 6.34842 6.44084 6.55057 6.66499 6.71203 6.87717 6.93290 7.53977 7.95420 8.17846 8.38464 8.52735 9.94844 10.47989 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.057312 B = 0.007711 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.432849 B = 3630.233107 C = 3733.226939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.014 3.986 4 C -0.113 4.113 5 C -0.147 4.147 6 C 0.170 3.830 7 N -0.470 5.470 8 O 0.043 5.957 9 C 0.301 3.699 10 C -0.419 4.419 11 H 0.111 0.889 12 C 0.071 3.929 13 N -0.766 5.766 14 Si 0.935 3.065 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.257 1.257 18 N -0.615 5.615 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 0.617 0.274 5.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.007 4.007 4 C -0.151 4.151 5 C -0.204 4.204 6 C -0.104 4.104 7 N -0.200 5.200 8 O -0.003 6.003 9 C 0.110 3.890 10 C -0.456 4.456 11 H 0.129 0.871 12 C -0.154 4.154 13 N -0.393 5.393 14 Si 0.758 3.242 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.180 1.180 18 N -0.359 5.359 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.208 0.273 0.862 6.273 hybrid contribution 0.998 0.207 -0.443 1.111 sum -5.210 0.480 0.418 5.249 Atomic orbital electron populations 1.21822 0.95935 1.01193 1.01706 1.21494 0.95101 0.96078 1.02522 1.19319 0.86528 0.96299 0.98515 1.21572 1.00242 0.95947 0.97321 1.21710 1.02244 0.95941 1.00505 1.24789 0.97621 0.97407 0.90601 1.74259 0.90997 1.28682 1.26055 1.85528 1.20979 1.58426 1.35392 1.24224 0.92624 0.87918 0.84260 1.18545 0.86464 1.32431 1.08210 0.87102 1.26182 1.01448 0.92814 0.94926 1.69640 1.26512 1.25197 1.17952 0.85858 0.78575 0.79233 0.80560 1.18904 1.19752 1.18016 1.72244 1.00985 1.34079 1.28578 0.92824 0.93026 0.92527 0.92134 0.91548 0.89913 0.91730 0.91610 0.92960 0.93428 0.92556 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.11 -1.94 5.38 -26.73 -0.14 -2.08 16 3 C 0.01 0.26 2.33 -91.77 -0.21 0.05 16 4 C -0.11 -1.92 5.26 -26.73 -0.14 -2.06 16 5 C -0.15 -2.52 9.73 37.16 0.36 -2.16 16 6 C 0.17 4.29 5.67 -156.78 -0.89 3.40 16 7 N -0.47 -12.91 12.15 31.51 0.38 -12.53 16 8 O 0.04 1.27 9.74 15.16 0.15 1.42 16 9 C 0.30 8.71 7.81 -16.35 -0.13 8.58 16 10 C -0.42 -11.26 9.48 -37.96 -0.36 -11.62 16 11 H 0.11 2.82 7.85 -52.49 -0.41 2.40 16 12 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 13 N -0.77 -19.80 12.06 55.57 0.67 -19.13 16 14 Si 0.93 17.84 29.56 -169.99 -5.03 12.82 16 15 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 18 N -0.62 -17.12 11.61 -11.51 -0.13 -17.25 16 19 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.06 0.90 6.34 -51.93 -0.33 0.57 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.17 7.38 -51.93 -0.38 0.79 16 30 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 258.75 15.07 3.90 3.90 Total: -1.00 -29.98 258.75 -5.28 -35.27 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.98 Total: 1.32 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.25 Total: -5.81 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.92 Total: -48.91 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.15 Total: 1.42 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.98 -5.28 -35.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395195820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.186 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds