Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47338 * 2 1 4 4 C 1.53006 * 109.46876 * 65.00147 * 3 2 1 5 5 C 1.52999 * 109.46955 * 185.00107 * 4 3 2 6 6 C 1.50703 * 109.47273 * 184.99903 * 3 2 1 7 7 N 1.30454 * 126.07267 * 300.02954 * 6 3 2 8 8 O 1.21279 * 110.68025 * 179.73549 * 7 6 3 9 9 C 1.34744 * 109.54007 * 359.97438 * 8 7 6 10 10 C 1.40336 * 126.79741 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00179 * 179.97438 * 10 9 8 12 12 C 1.40462 * 120.00042 * 359.97438 * 10 9 8 13 13 N 1.30507 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46964 * 90.00505 * 14 12 10 16 16 H 1.48504 * 109.47065 * 210.00143 * 14 12 10 17 17 H 1.48498 * 109.47213 * 330.00132 * 14 12 10 18 18 N 1.33333 * 106.40947 * 0.02562 * 9 8 7 19 19 H 1.09008 * 109.46820 * 59.99783 * 1 2 3 20 20 H 1.08993 * 109.47317 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47262 * 300.00040 * 1 2 3 22 22 H 1.09000 * 109.46887 * 240.00344 * 2 1 3 23 23 H 1.08995 * 109.47135 * 120.00199 * 2 1 3 24 24 H 1.09001 * 109.47324 * 305.00261 * 3 2 1 25 25 H 1.08996 * 109.47195 * 304.99712 * 4 3 2 26 26 H 1.08994 * 109.46802 * 65.00063 * 4 3 2 27 27 H 1.08996 * 109.47653 * 59.99847 * 5 4 3 28 28 H 1.08997 * 109.47360 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46977 * 300.00072 * 5 4 3 30 30 H 0.97000 * 119.99788 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0354 3.6023 1.2560 6 6 3.5420 1.4442 -0.1238 7 7 4.3819 0.8912 0.7072 8 8 5.5243 1.0572 0.3354 9 6 5.5264 1.7595 -0.8145 10 6 6.6504 2.1534 -1.5568 11 1 6.5244 2.7170 -2.4695 12 6 7.9392 1.8147 -1.1128 13 7 8.0914 1.1332 -0.0103 14 14 9.4352 2.3385 -2.1012 15 1 9.8947 3.6713 -1.6349 16 1 10.5242 1.3462 -1.9143 17 1 9.0761 2.4141 -3.5402 18 7 4.2494 2.0071 -1.1071 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6054 1.9815 -0.8418 25 1 0.5564 2.0470 1.4402 26 1 2.1408 1.6418 2.1426 27 1 1.5300 4.0870 0.4208 28 1 1.7475 4.0895 2.1875 29 1 3.1144 3.6818 1.1232 30 1 8.9814 0.8990 0.2961 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395195820.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = -1.963862 kcal Electronic energy + Delta-G solvation = -13922.555190 eV Core-core repulsion = 11525.635489 eV Total energy + Delta-G solvation = -2396.919701 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.00481 -38.26731 -36.05860 -34.95837 -32.67905 -32.17665 -28.58867 -27.83141 -23.90645 -23.61044 -23.30669 -21.23298 -19.20087 -17.83432 -17.39725 -17.00907 -15.76811 -15.64187 -15.13082 -15.03697 -14.48271 -13.68405 -13.54898 -13.30214 -13.08687 -12.87808 -12.70220 -12.28209 -12.19882 -12.12228 -11.97799 -11.69760 -11.62487 -11.49995 -11.17740 -10.91977 -10.22051 -8.95460 -7.08383 1.01576 1.39481 1.56774 1.60254 2.07154 2.14707 3.02462 3.24183 3.49829 3.71279 4.03532 4.22061 4.31754 4.35123 4.50706 4.57235 4.72365 4.82989 4.93505 4.97960 5.03906 5.11573 5.18937 5.28173 5.35133 5.47393 5.66237 5.89098 6.11360 6.32718 6.46648 8.07222 8.36673 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.057312 B = 0.007711 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.432849 B = 3630.233107 C = 3733.226939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.008 3.992 4 C -0.106 4.106 5 C -0.143 4.143 6 C 0.182 3.818 7 N -0.496 5.496 8 O 0.007 5.993 9 C 0.269 3.731 10 C -0.439 4.439 11 H 0.120 0.880 12 C 0.028 3.972 13 N -0.798 5.798 14 Si 1.022 2.978 15 H -0.253 1.253 16 H -0.258 1.258 17 H -0.248 1.248 18 N -0.643 5.643 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.007 0.993 30 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 1.138 -0.250 6.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.012 4.012 4 C -0.144 4.144 5 C -0.201 4.201 6 C -0.093 4.093 7 N -0.231 5.231 8 O -0.033 6.033 9 C 0.080 3.920 10 C -0.476 4.476 11 H 0.137 0.863 12 C -0.193 4.193 13 N -0.425 5.425 14 Si 0.838 3.162 15 H -0.177 1.177 16 H -0.182 1.182 17 H -0.172 1.172 18 N -0.388 5.388 19 H 0.083 0.917 20 H 0.087 0.913 21 H 0.092 0.908 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.680 0.785 0.349 6.735 hybrid contribution 1.145 0.043 -0.267 1.176 sum -5.535 0.828 0.081 5.597 Atomic orbital electron populations 1.21768 0.91966 1.02848 1.03075 1.21458 0.98403 0.93884 1.00982 1.19689 0.82753 0.98443 1.00280 1.21575 1.02707 0.95090 0.94988 1.21696 0.99104 0.96696 1.02574 1.25769 0.99938 0.94715 0.88835 1.74190 0.90853 1.30791 1.27274 1.85466 1.22089 1.59727 1.36066 1.24846 0.93819 0.88617 0.84743 1.19109 0.87415 1.32572 1.08479 0.86263 1.27399 1.04201 0.91912 0.95833 1.69700 1.28458 1.25013 1.19334 0.84619 0.73567 0.79306 0.78701 1.17722 1.18208 1.17150 1.72236 1.01061 1.35562 1.29950 0.91749 0.91342 0.90767 0.94079 0.92807 0.89240 0.87230 0.93322 0.91617 0.90678 0.97338 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.67 71.98 0.70 -2.47 16 2 C -0.11 -3.63 5.38 30.59 0.16 -3.47 16 3 C 0.01 0.33 2.33 -11.54 -0.03 0.30 16 4 C -0.11 -3.44 5.26 30.60 0.16 -3.27 16 5 C -0.14 -4.78 9.73 71.98 0.70 -4.08 16 6 C 0.18 9.48 5.67 138.61 0.79 10.27 16 7 N -0.50 -28.45 12.15 -56.63 -0.69 -29.13 16 8 O 0.01 0.43 9.74 64.31 0.63 1.06 16 9 C 0.27 16.23 7.81 85.06 0.66 16.89 16 10 C -0.44 -24.13 9.48 23.32 0.22 -23.91 16 11 H 0.12 6.14 7.85 -2.91 -0.02 6.12 16 12 C 0.03 1.38 5.50 85.43 0.47 1.85 16 13 N -0.80 -41.83 12.06 21.91 0.26 -41.56 16 14 Si 1.02 35.47 29.56 68.60 2.03 37.50 16 15 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 16 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 17 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 18 N -0.64 -37.14 11.61 -305.24 -3.54 -40.68 16 19 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 20 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.07 1.44 6.46 -2.39 -0.02 1.42 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 25 H 0.11 2.61 6.34 -2.39 -0.02 2.59 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.01 0.32 7.38 -2.38 -0.02 0.30 16 30 H 0.31 13.93 8.29 -92.71 -0.77 13.16 16 Total: -1.00 -68.51 258.75 3.65 -64.86 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.13 Total: 15.86 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 3.84 Total: -7.90 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -3.97 Total: -111.38 kcal Atomic # 8 Polarization: 0.43 SS G_CDS: 0.63 Total: 1.06 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -68.51 3.65 -64.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395195820.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.898 kcal (2) G-P(sol) polarization free energy of solvation -68.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds