Wall clock time and date at job start Mon Mar 30 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00265 * 2 1 4 4 H 1.48501 * 109.47318 * 239.99809 * 3 2 1 5 5 H 1.48501 * 109.47084 * 119.99647 * 3 2 1 6 6 H 1.48508 * 109.46836 * 359.97438 * 3 2 1 7 7 C 1.37879 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00102 * 173.28125 * 7 2 1 9 9 C 1.50700 * 119.99442 * 353.28181 * 7 2 1 10 10 O 1.42897 * 112.86427 * 72.40289 * 9 7 2 11 11 C 1.53851 * 113.63232 * 301.14451 * 9 7 2 12 12 C 1.53847 * 87.14634 * 220.32438 * 11 9 7 13 13 C 1.53396 * 113.62766 * 203.75972 * 9 7 2 14 14 C 1.52719 * 113.55290 * 25.15397 * 13 9 7 15 15 C 1.53140 * 109.24706 * 172.55742 * 14 13 9 16 16 C 1.52976 * 109.43346 * 57.82608 * 15 14 13 17 17 C 1.52981 * 109.69430 * 298.30914 * 16 15 14 18 18 C 1.52724 * 113.55388 * 254.33183 * 13 9 7 19 19 H 0.97001 * 120.00186 * 183.93887 * 1 2 3 20 20 H 0.96701 * 113.99400 * 304.71968 * 10 9 7 21 21 H 1.08996 * 113.60356 * 334.89311 * 11 9 7 22 22 H 1.09002 * 113.59748 * 105.67764 * 11 9 7 23 23 H 1.08996 * 113.62953 * 139.67992 * 12 11 9 24 24 H 1.09000 * 113.63075 * 270.63466 * 12 11 9 25 25 H 1.08995 * 109.51460 * 292.49250 * 14 13 9 26 26 H 1.09006 * 109.50795 * 52.62892 * 14 13 9 27 27 H 1.08994 * 109.47479 * 297.84179 * 15 14 13 28 28 H 1.08998 * 109.48832 * 177.81787 * 15 14 13 29 29 H 1.08995 * 109.43603 * 178.24416 * 16 15 14 30 30 H 1.08995 * 109.39293 * 58.35058 * 16 15 14 31 31 H 1.08994 * 109.47673 * 301.71610 * 17 16 15 32 32 H 1.08998 * 109.48953 * 181.69164 * 17 16 15 33 33 H 1.08999 * 109.51059 * 307.38167 * 18 13 9 34 34 H 1.09007 * 109.50970 * 67.51975 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0789 -1.1972 -0.1100 9 6 1.2587 -2.4947 0.1516 10 8 0.5132 -2.8470 -1.0155 11 6 0.4466 -2.5912 1.4547 12 6 0.9113 -4.0550 1.5455 13 6 2.1219 -3.6378 0.7005 14 6 3.3100 -3.1600 1.5326 15 6 3.9907 -4.3687 2.1811 16 6 4.4308 -5.3496 1.0929 17 6 3.2063 -5.8521 0.3259 18 6 2.5117 -4.6696 -0.3559 19 1 -0.4850 -0.8380 0.0577 20 1 -0.1075 -2.1650 -1.3064 21 1 0.8311 -1.9606 2.2563 22 1 -0.6280 -2.4813 1.3083 23 1 1.1713 -4.3689 2.5564 24 1 0.2470 -4.7564 1.0408 25 1 4.0216 -2.6438 0.8883 26 1 2.9605 -2.4792 2.3088 27 1 3.2899 -4.8629 2.8539 28 1 4.8625 -4.0361 2.7447 29 1 4.9430 -6.1951 1.5522 30 1 5.1086 -4.8456 0.4039 31 1 2.5140 -6.3297 1.0191 32 1 3.5205 -6.5733 -0.4286 33 1 1.6168 -5.0202 -0.8700 34 1 3.1914 -4.2142 -1.0762 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:06 Heat of formation + Delta-G solvation = -58.785591 kcal Electronic energy + Delta-G solvation = -15105.627155 eV Core-core repulsion = 12809.783823 eV Total energy + Delta-G solvation = -2295.843333 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.76320 -35.90310 -32.99307 -32.21287 -30.24561 -27.88458 -25.89203 -22.52784 -22.36161 -21.67867 -19.62222 -17.70218 -17.15102 -15.21894 -14.48178 -14.36299 -13.80371 -13.67732 -13.52914 -13.01336 -12.75239 -11.99674 -11.64718 -11.55151 -11.32757 -10.92343 -10.69868 -10.58351 -10.53459 -10.30203 -10.15506 -10.05427 -9.84037 -9.44859 -9.36861 -8.61285 -8.32145 -7.78874 -6.40313 -4.18487 3.40824 3.40879 3.60169 4.47130 5.06040 5.18352 5.29908 5.32239 5.58678 5.65360 5.81840 5.89324 5.98433 6.08498 6.09346 6.13956 6.34145 6.37381 6.39897 6.47467 6.58409 6.58661 6.64087 6.81261 6.89924 7.04440 7.08933 7.13296 7.38572 7.66575 8.05261 8.37515 8.77378 9.15033 9.54794 10.93147 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038343 B = 0.011838 C = 0.010532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.080329 B = 2364.792053 C = 2657.889156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.604 4.604 8 H 0.056 0.944 9 C 0.227 3.773 10 O -0.577 6.577 11 C -0.156 4.156 12 C -0.133 4.133 13 C -0.053 4.053 14 C -0.076 4.076 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.091 4.091 19 H 0.269 0.731 20 H 0.366 0.634 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 -7.202 2.937 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.893 3.107 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.642 4.642 8 H 0.074 0.926 9 C 0.188 3.812 10 O -0.384 6.384 11 C -0.194 4.194 12 C -0.170 4.170 13 C -0.053 4.053 14 C -0.113 4.113 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.129 4.129 19 H 0.081 0.919 20 H 0.213 0.787 21 H 0.092 0.908 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.238 -6.119 2.942 8.576 hybrid contribution -0.190 -1.115 0.060 1.133 sum 5.049 -7.235 3.002 9.319 Atomic orbital electron populations 1.70868 1.06816 1.30937 1.46129 1.25830 0.96464 1.02616 0.92840 0.83595 0.75020 0.75420 0.76635 1.21427 1.21327 1.20805 1.22290 0.95392 0.91539 1.54957 0.92551 1.19725 0.88051 0.91943 0.81497 1.86205 1.58015 1.46892 1.47276 1.23549 0.99183 0.94692 1.01982 1.22925 0.98189 0.97542 0.98387 1.21451 0.93499 0.95416 0.94949 1.21102 0.96118 0.95609 0.98513 1.21608 0.99521 0.97105 0.97525 1.21484 0.97641 0.98261 0.97924 1.21568 0.97061 0.98025 0.98870 1.21246 0.99728 0.94574 0.97333 0.91875 0.78689 0.90799 0.93447 0.93272 0.91457 0.91695 0.91794 0.92613 0.92821 0.93177 0.92354 0.92628 0.93143 0.91950 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.96 13.23 55.43 0.73 -25.22 16 2 C 0.03 0.74 5.31 -17.82 -0.09 0.65 16 3 Si 1.07 24.52 29.91 -169.99 -5.08 19.43 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.60 -16.31 7.71 -34.44 -0.27 -16.58 16 8 H 0.06 1.54 6.55 -52.49 -0.34 1.19 16 9 C 0.23 5.60 0.79 -91.12 -0.07 5.52 16 10 O -0.58 -14.60 12.20 -35.23 -0.43 -15.03 16 11 C -0.16 -3.62 5.84 -25.85 -0.15 -3.78 16 12 C -0.13 -2.69 6.76 -26.07 -0.18 -2.86 16 13 C -0.05 -1.11 0.66 -154.38 -0.10 -1.21 16 14 C -0.08 -1.48 3.99 -26.80 -0.11 -1.59 16 15 C -0.12 -1.89 5.84 -26.67 -0.16 -2.05 16 16 C -0.12 -1.71 5.86 -26.75 -0.16 -1.86 16 17 C -0.12 -1.86 5.85 -26.67 -0.16 -2.01 16 18 C -0.09 -1.78 4.70 -26.80 -0.13 -1.90 16 19 H 0.27 7.55 4.84 -40.82 -0.20 7.35 16 20 H 0.37 9.20 7.50 45.56 0.34 9.54 16 21 H 0.07 1.78 7.56 -51.93 -0.39 1.39 16 22 H 0.05 1.12 7.54 -51.93 -0.39 0.73 16 23 H 0.05 0.90 7.36 -51.93 -0.38 0.52 16 24 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 25 H 0.06 1.34 7.01 -51.93 -0.36 0.97 16 26 H 0.06 1.31 7.31 -51.93 -0.38 0.93 16 27 H 0.06 0.86 7.38 -51.93 -0.38 0.47 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.86 7.97 -51.93 -0.41 0.44 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.27 7.49 -51.93 -0.39 0.88 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 257.26 15.07 3.88 3.88 Total: -1.00 -28.28 257.26 -7.09 -35.37 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.62 Total: 9.25 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -1.56 Total: -27.67 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.73 Total: -25.22 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.43 Total: -15.03 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.28 -7.09 -35.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.416 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds