Wall clock time and date at job start Mon Mar 30 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00265 * 2 1 4 4 H 1.48501 * 109.47318 * 239.99809 * 3 2 1 5 5 H 1.48501 * 109.47084 * 119.99647 * 3 2 1 6 6 H 1.48508 * 109.46836 * 359.97438 * 3 2 1 7 7 C 1.37879 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00102 * 173.28125 * 7 2 1 9 9 C 1.50700 * 119.99442 * 353.28181 * 7 2 1 10 10 O 1.42897 * 112.86427 * 72.40289 * 9 7 2 11 11 C 1.53851 * 113.63232 * 301.14451 * 9 7 2 12 12 C 1.53847 * 87.14634 * 220.32438 * 11 9 7 13 13 C 1.53396 * 113.62766 * 203.75972 * 9 7 2 14 14 C 1.52719 * 113.55290 * 25.15397 * 13 9 7 15 15 C 1.53140 * 109.24706 * 172.55742 * 14 13 9 16 16 C 1.52976 * 109.43346 * 57.82608 * 15 14 13 17 17 C 1.52981 * 109.69430 * 298.30914 * 16 15 14 18 18 C 1.52724 * 113.55388 * 254.33183 * 13 9 7 19 19 H 0.97001 * 120.00186 * 183.93887 * 1 2 3 20 20 H 0.96701 * 113.99400 * 304.71968 * 10 9 7 21 21 H 1.08996 * 113.60356 * 334.89311 * 11 9 7 22 22 H 1.09002 * 113.59748 * 105.67764 * 11 9 7 23 23 H 1.08996 * 113.62953 * 139.67992 * 12 11 9 24 24 H 1.09000 * 113.63075 * 270.63466 * 12 11 9 25 25 H 1.08995 * 109.51460 * 292.49250 * 14 13 9 26 26 H 1.09006 * 109.50795 * 52.62892 * 14 13 9 27 27 H 1.08994 * 109.47479 * 297.84179 * 15 14 13 28 28 H 1.08998 * 109.48832 * 177.81787 * 15 14 13 29 29 H 1.08995 * 109.43603 * 178.24416 * 16 15 14 30 30 H 1.08995 * 109.39293 * 58.35058 * 16 15 14 31 31 H 1.08994 * 109.47673 * 301.71610 * 17 16 15 32 32 H 1.08998 * 109.48953 * 181.69164 * 17 16 15 33 33 H 1.08999 * 109.51059 * 307.38167 * 18 13 9 34 34 H 1.09007 * 109.50970 * 67.51975 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0789 -1.1972 -0.1100 9 6 1.2587 -2.4947 0.1516 10 8 0.5132 -2.8470 -1.0155 11 6 0.4466 -2.5912 1.4547 12 6 0.9113 -4.0550 1.5455 13 6 2.1219 -3.6378 0.7005 14 6 3.3100 -3.1600 1.5326 15 6 3.9907 -4.3687 2.1811 16 6 4.4308 -5.3496 1.0929 17 6 3.2063 -5.8521 0.3259 18 6 2.5117 -4.6696 -0.3559 19 1 -0.4850 -0.8380 0.0577 20 1 -0.1075 -2.1650 -1.3064 21 1 0.8311 -1.9606 2.2563 22 1 -0.6280 -2.4813 1.3083 23 1 1.1713 -4.3689 2.5564 24 1 0.2470 -4.7564 1.0408 25 1 4.0216 -2.6438 0.8883 26 1 2.9605 -2.4792 2.3088 27 1 3.2899 -4.8629 2.8539 28 1 4.8625 -4.0361 2.7447 29 1 4.9430 -6.1951 1.5522 30 1 5.1086 -4.8456 0.4039 31 1 2.5140 -6.3297 1.0191 32 1 3.5205 -6.5733 -0.4286 33 1 1.6168 -5.0202 -0.8700 34 1 3.1914 -4.2142 -1.0762 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:05 Heat of formation + Delta-G solvation = -75.888117 kcal Electronic energy + Delta-G solvation = -15106.368776 eV Core-core repulsion = 12809.783823 eV Total energy + Delta-G solvation = -2296.584954 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46652 -37.52527 -34.77166 -34.29812 -31.66642 -29.45070 -27.88657 -24.42481 -23.89611 -23.17021 -21.12982 -19.67376 -18.89224 -16.85201 -16.33432 -16.10671 -15.59777 -15.30789 -15.18942 -14.53272 -14.22693 -13.59002 -13.44709 -13.12506 -13.02562 -12.70721 -12.52364 -12.23707 -12.01935 -11.97202 -11.80794 -11.57703 -11.55530 -11.12181 -10.83560 -10.61645 -10.13736 -9.76560 -8.56911 -6.36722 1.52311 1.57883 1.77796 2.54762 3.07853 3.51371 3.75605 3.89917 4.10713 4.13914 4.25769 4.41002 4.49234 4.52171 4.64375 4.70673 4.79502 4.89125 4.90522 4.93321 5.09726 5.19764 5.24772 5.31957 5.34387 5.35770 5.49132 5.62344 5.70935 5.84983 6.05120 6.19406 6.61364 7.11591 7.43441 8.76475 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038343 B = 0.011838 C = 0.010532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.080329 B = 2364.792053 C = 2657.889156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.017 4.017 3 Si 1.107 2.893 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.613 4.613 8 H 0.047 0.953 9 C 0.199 3.801 10 O -0.581 6.581 11 C -0.155 4.155 12 C -0.114 4.114 13 C -0.050 4.050 14 C -0.074 4.074 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.089 4.089 19 H 0.262 0.738 20 H 0.361 0.639 21 H 0.059 0.941 22 H 0.033 0.967 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -8.570 3.908 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.217 4.217 3 Si 0.930 3.070 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.651 4.651 8 H 0.065 0.935 9 C 0.160 3.840 10 O -0.387 6.387 11 C -0.193 4.193 12 C -0.151 4.151 13 C -0.050 4.050 14 C -0.112 4.112 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.127 4.127 19 H 0.073 0.927 20 H 0.207 0.793 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.706 -7.513 3.916 10.805 hybrid contribution -0.667 -0.676 -0.282 0.991 sum 6.038 -8.188 3.634 10.804 Atomic orbital electron populations 1.70958 1.07554 1.30618 1.47884 1.27053 0.96599 1.05839 0.92174 0.83048 0.74290 0.71997 0.77674 1.20234 1.19620 1.21060 1.22552 0.95127 0.93005 1.54459 0.93520 1.20109 0.89254 0.93034 0.81588 1.86203 1.57993 1.46654 1.47881 1.23430 0.98009 0.97051 1.00839 1.22810 0.97286 0.95282 0.99742 1.21489 0.93987 0.94252 0.95289 1.21062 0.95339 0.97165 0.97621 1.21576 1.00134 0.95496 0.97879 1.21495 0.97161 0.99000 0.97455 1.21534 0.97382 0.96518 0.99425 1.21191 0.99090 0.95685 0.96692 0.92674 0.79254 0.92186 0.94787 0.90635 0.91037 0.93590 0.93495 0.91528 0.90858 0.89923 0.92861 0.91615 0.91189 0.93481 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.23 21.45 0.28 -53.98 16 2 C -0.02 -0.94 5.31 84.66 0.45 -0.49 16 3 Si 1.11 49.59 29.91 68.60 2.05 51.64 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.61 -33.77 7.71 25.60 0.20 -33.58 16 8 H 0.05 2.60 6.55 -2.91 -0.02 2.58 16 9 C 0.20 9.97 0.79 -11.12 -0.01 9.96 16 10 O -0.58 -30.16 12.20 -148.98 -1.82 -31.97 16 11 C -0.15 -7.29 5.84 31.17 0.18 -7.11 16 12 C -0.11 -4.44 6.76 31.02 0.21 -4.23 16 13 C -0.05 -2.06 0.66 -52.10 -0.03 -2.10 16 14 C -0.07 -2.82 3.99 30.55 0.12 -2.70 16 15 C -0.11 -3.19 5.84 30.63 0.18 -3.02 16 16 C -0.11 -2.91 5.86 30.58 0.18 -2.73 16 17 C -0.11 -3.13 5.85 30.64 0.18 -2.95 16 18 C -0.09 -3.36 4.70 30.55 0.14 -3.22 16 19 H 0.26 15.17 4.84 -92.71 -0.45 14.73 16 20 H 0.36 18.90 7.50 -74.06 -0.56 18.34 16 21 H 0.06 2.94 7.56 -2.39 -0.02 2.92 16 22 H 0.03 1.64 7.54 -2.39 -0.02 1.62 16 23 H 0.08 2.55 7.36 -2.39 -0.02 2.53 16 24 H 0.07 2.73 8.06 -2.39 -0.02 2.71 16 25 H 0.05 1.89 7.01 -2.39 -0.02 1.87 16 26 H 0.05 1.90 7.31 -2.38 -0.02 1.89 16 27 H 0.07 1.76 7.38 -2.39 -0.02 1.74 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.75 7.97 -2.39 -0.02 1.73 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.89 7.49 -2.39 -0.02 1.87 16 34 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -60.94 257.26 3.16 -57.78 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.84 Total: 28.69 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 1.80 Total: -52.16 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.28 Total: -53.98 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.82 Total: -31.97 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -60.94 3.16 -57.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.104 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds