Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46943 * 2 1 4 4 C 1.36938 * 120.00081 * 275.31418 * 3 2 1 5 5 H 1.07996 * 119.99748 * 38.64702 * 4 3 2 6 6 C 1.38811 * 119.99874 * 218.64034 * 4 3 2 7 7 N 1.31622 * 119.99702 * 19.60949 * 6 4 3 8 8 Si 1.86797 * 119.99951 * 199.60398 * 6 4 3 9 9 H 1.48493 * 109.47363 * 90.00606 * 8 6 4 10 10 H 1.48508 * 109.47111 * 210.00404 * 8 6 4 11 11 H 1.48496 * 109.47177 * 330.00085 * 8 6 4 12 12 C 1.46508 * 119.99874 * 95.31529 * 3 2 1 13 13 C 1.50701 * 109.46986 * 270.00134 * 12 3 2 14 14 N 1.34472 * 126.16878 * 90.02524 * 13 12 3 15 15 C 1.30253 * 108.70293 * 179.97438 * 14 13 12 16 16 O 1.33962 * 108.75883 * 359.97438 * 15 14 13 17 17 C 1.34328 * 126.16064 * 270.02079 * 13 12 3 18 18 C 1.50697 * 126.44798 * 0.02562 * 17 13 12 19 19 H 1.08998 * 109.47652 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47447 * 299.99849 * 1 2 3 21 21 H 1.09003 * 109.47567 * 59.99679 * 1 2 3 22 22 H 1.08996 * 109.46557 * 240.00139 * 2 1 3 23 23 H 1.08996 * 109.46731 * 120.00432 * 2 1 3 24 24 H 0.96999 * 119.99355 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.46768 * 149.99910 * 12 3 2 26 26 H 1.09003 * 109.46521 * 30.00059 * 12 3 2 27 27 H 1.08000 * 125.61713 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.47185 * 89.99720 * 18 17 13 29 29 H 1.09003 * 109.47476 * 210.00180 * 18 17 13 30 30 H 1.09001 * 109.46850 * 330.00169 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1429 2.0634 -1.1808 5 1 1.4010 1.9411 -1.9560 6 6 3.2228 2.9122 -1.3813 7 7 4.3053 2.7854 -0.6433 8 14 3.1398 4.2341 -2.6985 9 1 2.5862 5.4816 -2.1136 10 1 4.5041 4.4964 -3.2232 11 1 2.2634 3.7751 -3.8059 12 6 2.3733 2.0327 1.2634 13 6 1.1611 2.7275 1.8281 14 7 0.2571 2.1904 2.6664 15 6 -0.6463 3.0887 2.9377 16 8 -0.3423 4.2170 2.2825 17 6 0.7891 3.9951 1.5850 18 6 1.5030 4.9836 0.6994 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 5.0601 3.3783 -0.7837 25 1 3.1617 2.7641 1.0859 26 1 2.7256 1.2832 1.9721 27 1 -1.4997 2.9471 3.5843 28 1 1.1185 4.9043 -0.3174 29 1 1.3358 5.9936 1.0735 30 1 2.5715 4.7676 0.7016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = 19.061941 kcal Electronic energy + Delta-G solvation = -14517.134743 eV Core-core repulsion = 12121.126789 eV Total energy + Delta-G solvation = -2396.007954 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.03730 -37.97459 -35.42350 -33.86755 -33.31788 -30.87759 -28.76228 -26.81194 -25.34838 -22.93700 -22.43287 -21.36314 -18.75676 -17.75556 -17.38158 -16.86380 -15.86857 -15.57496 -15.34795 -14.91449 -14.23489 -14.12178 -13.91785 -13.47095 -13.26413 -12.88465 -12.75448 -12.48613 -12.42566 -12.15040 -12.01446 -11.81133 -11.36418 -11.26869 -10.50399 -9.39493 -8.55995 -7.82239 -5.45884 0.73632 1.46527 1.51107 1.57588 1.93684 2.05342 2.53193 3.24966 3.57188 3.84478 4.14076 4.23936 4.42683 4.43908 4.64638 4.74827 4.82682 4.88058 5.01581 5.06600 5.23034 5.26260 5.31467 5.53695 5.58853 5.70046 5.73040 6.49194 7.00429 7.17780 7.82700 8.41967 9.16626 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.014907 C = 0.011431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.749879 B = 1877.845019 C = 2448.928877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 N -0.588 5.588 4 C -0.266 4.266 5 H 0.045 0.955 6 C -0.011 4.011 7 N -0.913 5.913 8 Si 0.935 3.065 9 H -0.261 1.261 10 H -0.294 1.294 11 H -0.279 1.279 12 C 0.225 3.775 13 C -0.026 4.026 14 N -0.511 5.511 15 C 0.160 3.840 16 O -0.218 6.218 17 C -0.059 4.059 18 C -0.050 4.050 19 H 0.063 0.937 20 H 0.045 0.955 21 H 0.029 0.971 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.256 0.744 25 H 0.091 0.909 26 H 0.029 0.971 27 H 0.294 0.706 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 2.951 4.809 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.016 3.984 3 N -0.309 5.309 4 C -0.396 4.396 5 H 0.062 0.938 6 C -0.209 4.209 7 N -0.557 5.557 8 Si 0.762 3.238 9 H -0.186 1.186 10 H -0.220 1.220 11 H -0.204 1.204 12 C 0.097 3.903 13 C -0.147 4.147 14 N -0.240 5.240 15 C -0.066 4.066 16 O -0.106 6.106 17 C -0.112 4.112 18 C -0.107 4.107 19 H 0.082 0.918 20 H 0.064 0.936 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.309 0.691 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.271 2.422 5.019 9.161 hybrid contribution 0.028 1.074 -0.923 1.417 sum -7.243 3.496 4.096 9.026 Atomic orbital electron populations 1.22121 0.98208 1.00423 1.00262 1.20918 0.93173 0.85819 0.98494 1.43867 1.76173 1.09152 1.01726 1.19044 1.03524 1.22747 0.94299 0.93774 1.25633 0.93583 1.02348 0.99362 1.70070 1.03752 1.38665 1.43166 0.85840 0.76734 0.81240 0.79969 1.18628 1.22027 1.20417 1.19142 0.90143 0.95852 0.85134 1.22899 1.00998 0.92518 0.98293 1.70291 1.04564 1.33278 1.15889 1.28979 1.01263 0.78323 0.98002 1.84339 1.36945 1.40054 1.49226 1.23302 0.88695 0.98533 1.00644 1.20155 0.98751 0.95759 0.96042 0.91780 0.93625 0.95175 0.94512 0.94155 0.93425 0.89117 0.95239 0.69110 0.91169 0.89166 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 10.21 71.98 0.73 -5.26 16 2 C 0.14 6.36 6.44 86.38 0.56 6.92 16 3 N -0.59 -29.93 2.41 -706.34 -1.70 -31.63 16 4 C -0.27 -14.30 9.46 84.03 0.79 -13.51 16 5 H 0.04 2.45 7.90 -2.91 -0.02 2.43 16 6 C -0.01 -0.58 4.83 84.86 0.41 -0.17 16 7 N -0.91 -50.22 11.43 21.65 0.25 -49.97 16 8 Si 0.93 41.55 29.10 68.60 2.00 43.55 16 9 H -0.26 -10.73 7.07 99.48 0.70 -10.03 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.22 11.03 5.66 85.63 0.48 11.52 16 13 C -0.03 -1.16 6.53 41.26 0.27 -0.89 16 14 N -0.51 -20.09 10.35 -304.08 -3.15 -23.24 16 15 C 0.16 4.87 13.23 130.48 1.73 6.60 16 16 O -0.22 -7.61 10.77 -3.69 -0.04 -7.65 16 17 C -0.06 -2.38 7.39 24.79 0.18 -2.20 16 18 C -0.05 -1.90 10.22 71.23 0.73 -1.17 16 19 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 20 H 0.04 1.88 7.01 -2.39 -0.02 1.86 16 21 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 23 H 0.04 1.74 7.83 -2.39 -0.02 1.73 16 24 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 25 H 0.09 4.81 4.55 -2.39 -0.01 4.80 16 26 H 0.03 1.45 7.86 -2.39 -0.02 1.43 16 27 H 0.29 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.07 2.78 7.60 -2.39 -0.02 2.76 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.08 3.24 7.01 -2.39 -0.02 3.22 16 Total: -1.00 -62.19 257.96 4.36 -57.83 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.12 Total: 9.27 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.89 Total: 1.84 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.60 Total: -104.84 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.04 Total: -7.65 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.00 Total: 43.55 kcal Total: -62.19 4.36 -57.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.894 kcal (2) G-P(sol) polarization free energy of solvation -62.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds