Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48503 * 109.47099 * 239.99649 * 3 2 1 5 5 H 1.48498 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46969 * 119.99685 * 3 2 1 7 7 C 1.37880 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00123 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46896 * 59.99718 * 9 7 2 11 11 O 1.42897 * 109.46860 * 299.99927 * 9 7 2 12 12 C 1.52999 * 109.46956 * 179.97438 * 9 7 2 13 13 H 1.08998 * 109.47301 * 56.91713 * 12 9 7 14 14 C 1.53007 * 109.46874 * 176.91850 * 12 9 7 15 15 C 1.53000 * 109.46995 * 120.00155 * 14 12 9 16 16 C 1.53006 * 109.46893 * 299.99987 * 15 14 12 17 17 C 1.52994 * 109.47315 * 59.99959 * 16 15 14 18 18 C 1.53001 * 109.47336 * 0.02562 * 17 16 15 19 19 C 1.52998 * 109.47176 * 59.99251 * 18 17 16 20 20 C 1.52994 * 109.47599 * 300.00588 * 19 18 17 21 21 H 0.97003 * 120.00162 * 0.02562 * 1 2 3 22 22 H 0.96700 * 114.00236 * 300.00019 * 11 9 7 23 23 H 1.09002 * 109.46652 * 359.97438 * 14 12 9 24 24 H 1.09002 * 109.46718 * 240.00141 * 14 12 9 25 25 H 1.08999 * 109.47078 * 180.02562 * 15 14 12 26 26 H 1.08994 * 109.46977 * 180.02562 * 16 15 14 27 27 H 1.09002 * 109.46783 * 300.00322 * 16 15 14 28 28 H 1.09005 * 109.46949 * 120.00238 * 17 16 15 29 29 H 1.08993 * 109.47451 * 240.00037 * 17 16 15 30 30 H 1.08994 * 109.47325 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.47116 * 180.02562 * 19 18 17 32 32 H 1.09005 * 109.46656 * 60.00383 * 19 18 17 33 33 H 1.09005 * 109.47392 * 240.00423 * 20 19 18 34 34 H 1.08994 * 109.47766 * 119.99518 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 0.4290 -2.5746 1.1670 12 6 2.2453 -3.6621 0.0005 13 1 2.9077 -3.5737 0.8616 14 6 1.4818 -4.9858 0.0781 15 6 1.8007 -5.8315 -1.1564 16 6 1.3798 -5.0730 -2.4168 17 6 2.1431 -3.7494 -2.4943 18 6 3.0735 -3.6256 -1.2860 19 6 4.0676 -4.7886 -1.2865 20 6 3.3043 -6.1122 -1.2090 21 1 -0.4850 0.8401 -0.0004 22 1 0.9208 -2.5291 1.9984 23 1 0.4109 -4.7859 0.1154 24 1 1.7817 -5.5261 0.9760 25 1 1.2565 -6.7743 -1.1014 26 1 1.6065 -5.6757 -3.2962 27 1 0.3089 -4.8732 -2.3799 28 1 2.7328 -3.7232 -3.4107 29 1 1.4349 -2.9209 -2.4943 30 1 3.6170 -2.6824 -1.3410 31 1 4.7301 -4.7006 -0.4255 32 1 4.6570 -4.7622 -2.2031 33 1 3.6044 -6.6527 -0.3112 34 1 3.5310 -6.7146 -2.0886 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691533465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -83.244194 kcal Electronic energy + Delta-G solvation = -14970.512190 eV Core-core repulsion = 12673.608253 eV Total energy + Delta-G solvation = -2296.903937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.94208 -35.37791 -32.09248 -30.99700 -30.43438 -30.11067 -26.28896 -22.87139 -22.03103 -21.43667 -20.08427 -16.91857 -15.93144 -15.65359 -15.29929 -15.07238 -14.50253 -13.63351 -12.82063 -12.66774 -12.02154 -11.60718 -11.56844 -11.51278 -11.40076 -11.37186 -11.17245 -10.95721 -10.79532 -10.57580 -10.11501 -9.92921 -9.55279 -9.25193 -9.12215 -8.63575 -8.46366 -7.93602 -5.93527 -4.10043 3.31622 3.37116 3.38900 4.43952 5.06963 5.15107 5.21751 5.33486 5.74351 5.78747 5.90465 5.90762 5.92758 5.95585 6.08263 6.12800 6.16782 6.27008 6.38688 6.47314 6.58107 6.66121 6.71175 6.87333 6.99529 7.00156 7.11555 7.22343 7.25578 7.84546 7.97598 8.30092 8.92654 9.47278 9.66974 11.10532 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.010491 C = 0.009737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.053258 B = 2668.219313 C = 2875.030154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.565 4.565 8 H 0.054 0.946 9 C 0.233 3.767 10 H 0.059 0.941 11 O -0.567 6.567 12 C -0.104 4.104 13 H 0.053 0.947 14 C -0.106 4.106 15 C -0.085 4.085 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.069 4.069 19 C -0.114 4.114 20 C -0.109 4.109 21 H 0.259 0.741 22 H 0.342 0.658 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -9.177 -2.636 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.127 4.127 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.603 4.603 8 H 0.073 0.927 9 C 0.176 3.824 10 H 0.077 0.923 11 O -0.370 6.370 12 C -0.123 4.123 13 H 0.071 0.929 14 C -0.144 4.144 15 C -0.104 4.104 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.088 4.088 19 C -0.152 4.152 20 C -0.147 4.147 21 H 0.069 0.931 22 H 0.186 0.814 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.445 -9.114 -3.107 10.606 hybrid contribution 1.039 1.039 0.373 1.516 sum 5.484 -8.075 -2.734 10.137 Atomic orbital electron populations 1.70066 1.05873 1.26283 1.47624 1.25044 0.94628 0.98925 0.94138 0.86826 0.79791 0.83653 0.78621 1.20237 1.21326 1.20269 1.21697 0.93053 0.91651 1.53881 0.92734 1.19516 0.87773 0.89444 0.85699 0.92325 1.86555 1.38584 1.96306 1.15526 1.21851 0.98008 0.96119 0.96359 0.92887 1.21586 1.01345 0.95903 0.95538 1.21035 0.95369 0.97814 0.96162 1.21505 1.00013 0.96683 0.96545 1.21523 0.98808 0.97579 0.97104 1.20884 0.95456 0.97409 0.95022 1.21588 0.97741 0.95295 1.00583 1.21515 0.95532 0.97176 1.00449 0.93110 0.81443 0.91342 0.93624 0.92473 0.93214 0.92320 0.93402 0.90593 0.90516 0.92742 0.92959 0.92830 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 12.84 55.43 0.71 -24.90 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.56 -15.29 8.04 -34.44 -0.28 -15.57 16 8 H 0.05 1.45 6.92 -52.49 -0.36 1.08 16 9 C 0.23 5.80 1.94 -27.88 -0.05 5.75 16 10 H 0.06 1.62 6.27 -51.93 -0.33 1.29 16 11 O -0.57 -14.68 11.94 -35.23 -0.42 -15.10 16 12 C -0.10 -2.12 1.94 -90.59 -0.18 -2.30 16 13 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.11 -1.93 5.11 -26.73 -0.14 -2.06 16 15 C -0.09 -1.34 3.20 -90.59 -0.29 -1.63 16 16 C -0.11 -1.77 5.71 -26.73 -0.15 -1.93 16 17 C -0.11 -2.03 5.36 -26.73 -0.14 -2.17 16 18 C -0.07 -1.29 2.51 -90.59 -0.23 -1.52 16 19 C -0.11 -1.77 5.71 -26.74 -0.15 -1.93 16 20 C -0.11 -1.56 5.71 -26.71 -0.15 -1.71 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.34 7.93 9.04 45.56 0.41 8.34 16 23 H 0.07 1.37 7.20 -51.93 -0.37 1.00 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.57 6.36 -51.93 -0.33 1.24 16 30 H 0.08 1.56 6.82 -51.93 -0.35 1.21 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 258.60 15.07 3.90 3.90 Total: -1.00 -29.26 258.60 -7.39 -36.64 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.70 Total: 6.17 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -1.86 Total: -22.97 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.71 Total: -24.90 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.42 Total: -15.10 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.26 -7.39 -36.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691533465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.601 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds